Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000945.1 Corchorus capsularis cultivar CVL-1 contig00945, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1263
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29


Found at i:755 original size:15 final size:16

Alignment explanation


    Indices: 723--756  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        713 AAAGAAGAAT

                 *          
        723 TAAAATTAAATCTAAC
          1 TAAAAATAAATCTAAC

                            
        739 TAAAAATAAAT-TAAC
          1 TAAAAATAAATCTAAC

               
        754 TAA
          1 TAA

        757 GAAAGCAATC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29


Consensus pattern (16 bp):   
TAAAAATAAATCTAAC
Done.