Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009454.1 Corchorus capsularis cultivar CVL-1 contig09475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 967

Length: 1613
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31


Found at i:534 original size:24 final size:27

Alignment explanation


    Indices: 484--536  Score: 76
    Period size: 26  Copynumber: 2.1  Consensus size: 27

        474 AGGATGAAAT

                                       
        484 TCCTCCTTATTTTCCTTCTCTTGATTC
          1 TCCTCCTTATTTTCCTTCTCTTGATTC

                    *                  
        511 TCCTCC-TCTTTTCCTTC-CTT-ATTC
          1 TCCTCCTTATTTTCCTTCTCTTGATTC

              
        535 TC
          1 TC

        537 ATCACTAGAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  24    6  0.24
  25    3  0.12
  26   10  0.40
  27    6  0.24

ACGTcount: A:0.06, C:0.38, G:0.02, T:0.55


Consensus pattern (27 bp):   
TCCTCCTTATTTTCCTTCTCTTGATTC
Done.