Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009456.1 Corchorus capsularis cultivar CVL-1 contig09477, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10645
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32


Found at i:573 original size:27 final size:27

Alignment explanation


    Indices: 543--625  Score: 71
    Period size: 27  Copynumber: 3.1  Consensus size: 27

        533 CTTCCACCTG

                                       
        543 AGTCGCCCTTTTCGGGTTTTCAACTCA
          1 AGTCGCCCTTTTCGGGTTTTCAACTCA

                    *   * **  *       **
        570 AGTC-CCCCTTTAGCATCCTTC-ACTTG
          1 AGTCGCCCTTTTCGGGT-TTTCAACTCA

              *                        
        596 AGCCGCCCTTTTCGGGTTTTCAACTCA
          1 AGTCGCCCTTTTCGGGTTTTCAACTCA

               
        623 AGT
          1 AGT

        626 GACCCCCAAT


Statistics
Matches: 37,  Mismatches: 16, Indels: 6
        0.63            0.27        0.10

Matches are distributed among these distances:
  26   17  0.46
  27   20  0.54

ACGTcount: A:0.16, C:0.33, G:0.17, T:0.35


Consensus pattern (27 bp):   
AGTCGCCCTTTTCGGGTTTTCAACTCA
Done.