Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009457.1 Corchorus capsularis cultivar CVL-1 contig09478, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3036
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33


Found at i:951 original size:16 final size:16

Alignment explanation


    Indices: 930--965  Score: 54
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        920 TCAAAAATTG

                            
        930 TTATTATCACTTATTA
          1 TTATTATCACTTATTA

                   * *      
        946 TTATTATTATTTATTA
          1 TTATTATCACTTATTA

                
        962 TTAT
          1 TTAT

        966 ATATGTTTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.31, C:0.06, G:0.00, T:0.64


Consensus pattern (16 bp):   
TTATTATCACTTATTA
Done.