Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009459.1 Corchorus capsularis cultivar CVL-1 contig09480, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2262
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1231 original size:21 final size:21

Alignment explanation


    Indices: 1207--1250  Score: 54
    Period size: 22  Copynumber: 2.0  Consensus size: 21

       1197 GGCTTTTATT

                                  
       1207 TACAAA-ACAGTACCAAATAAA
          1 TACAAATACA-TACCAAATAAA

                        *         
       1228 TACAAATTACATGCCAAATAAA
          1 TACAAA-TACATACCAAATAAA

             
       1250 T
          1 T

       1251 GTAAAGTAGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  21    6  0.30
  22   11  0.55
  23    3  0.15

ACGTcount: A:0.57, C:0.18, G:0.05, T:0.20


Consensus pattern (21 bp):   
TACAAATACATACCAAATAAA
Done.