Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009460.1 Corchorus capsularis cultivar CVL-1 contig09481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36523

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1306--1401
38
2.5
39
79
6
97
51
7
19
21
1.71
1422--1515
37
2.4
38
79
11
111
46
6
19
27
1.74
1452--1605
71
2.2
72
87
1
229
48
8
17
25
1.75
2028--2088
25
2.6
23
72
12
61
54
3
21
21
1.59
4010--4065
16
3.6
16
76
13
71
7
17
35
39
1.78
4012--4121
54
2.0
55
85
1
150
9
20
35
35
1.84
7475--7520
15
2.9
16
77
6
58
41
30
15
13
1.85
7614--7642
15
1.9
15
100
0
58
41
27
13
17
1.87
9107--9172
7
9.6
7
75
14
57
81
6
10
1
0.92
9109--9172
14
4.8
14
76
14
64
81
6
10
1
0.94
9108--9174
28
2.5
27
79
11
77
79
7
10
2
1.04
10019--10865
421
2.0
417
95
0
1514
24
17
21
36
1.94
21616--21657
22
1.9
22
90
0
66
35
4
7
52
1.50
21639--21710
34
2.1
35
87
5
103
47
6
9
36
1.64
24666--24705
19
2.2
19
86
4
55
0
50
2
47
1.14
34343--34382
12
3.2
12
86
6
62
52
5
7
35
1.51
34343--34378
13
2.8
13
91
4
56
55
2
8
33
1.44
35535--35608
32
2.3
32
83
4
96
22
24
16
36
1.94
36295--36336
13
3.0
14
82
6
50
76
0
4
19
0.96

Tables:   1

The End!