Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009461.1 Corchorus capsularis cultivar CVL-1 contig09482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38226

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1496--1520
2
12.5
2
100
0
50
52
0
48
0
1.00
2774--2819
15
2.9
16
77
6
58
41
30
15
13
1.85
2913--2941
15
1.9
15
100
0
58
41
27
13
17
1.87
4444--4559
58
2.0
58
96
0
214
25
10
22
42
1.85
4739--4854
58
2.0
58
94
0
205
25
10
21
43
1.84
4323--4911
295
2.0
296
98
0
1144
31
12
16
39
1.86
7339--7564
114
1.9
117
91
5
370
36
7
10
45
1.67
12031--12192
60
2.7
60
92
0
263
32
20
20
26
1.97
12221--12419
31
6.5
31
72
13
137
26
17
19
37
1.93
12286--12384
29
3.3
29
72
10
101
28
19
18
34
1.95
12256--12415
60
2.7
60
91
1
259
26
18
19
35
1.95
15981--16015
16
2.1
17
89
5
54
22
17
5
54
1.64
16234--16276
18
2.4
17
77
11
50
9
2
16
72
1.21
21700--21762
29
2.1
29
88
5
90
47
17
6
28
1.72
21872--21896
2
12.5
2
100
0
50
52
0
0
48
1.00
23022--23050
2
14.5
2
100
0
58
48
0
0
51
1.00
32055--32293
83
2.8
83
88
2
325
42
22
7
26
1.81

Tables:   1

The End!