genome.fa.s9464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009464.1 Corchorus capsularis cultivar CVL-1 contig09485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109949

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2944--3035	33	2.8	33	77	0	103	11	25	41	21	1.87
3005--3088	33	2.5	33	88	3	116	11	29	35	22	1.90
8157--8206	10	5.0	10	72	18	50	26	46	22	6	1.74
12061--12205	35	4.1	34	81	6	157	31	17	11	39	1.86
12151--12253	50	2.0	51	92	1	172	32	19	7	40	1.80
12151--12221	16	4.3	16	67	13	54	32	19	7	40	1.79
12201--12378	35	5.1	35	90	1	286	32	17	10	39	1.83
12092--12323	120	1.9	121	91	2	378	31	18	9	40	1.82
12201--12383	69	2.6	69	92	0	294	31	18	9	40	1.83
13019--13058	20	2.0	21	90	5	64	40	15	2	42	1.60
12868--13238	150	2.4	154	84	6	452	40	14	2	41	1.60
12851--13228	51	7.5	51	80	9	380	40	14	2	42	1.60
17647--17762	56	2.1	57	81	15	145	50	6	19	23	1.72
17808--17881	22	3.4	21	77	7	76	60	4	17	17	1.51
17844--17943	31	3.3	31	92	1	157	59	5	21	15	1.55
17788--17943	53	2.9	51	67	15	118	57	5	21	16	1.59
17788--18051	16	16.9	16	68	18	121	56	4	21	17	1.59
17913--18096	76	2.5	72	78	7	179	53	4	22	19	1.62
18024--18133	40	2.8	40	94	0	184	52	3	21	21	1.62
17889--18134	116	2.2	110	83	9	304	54	4	21	19	1.62
18062--18134	16	5.2	15	69	29	54	56	4	20	19	1.58
18233--18259	14	1.9	14	100	0	54	51	7	18	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18179--18290	59	1.9	58	82	10	138	53	5	19	21	1.65
18272--18338	33	2.0	33	85	0	89	53	5	19	20	1.66
18435--18479	17	2.6	17	82	3	63	53	4	20	22	1.63
20820--20848	15	1.9	15	100	0	58	62	6	0	31	1.22
35022--35054	15	2.2	15	94	0	57	66	12	0	21	1.23
37470--37511	22	1.9	22	85	9	59	40	23	21	14	1.90
38076--38470	131	3.0	131	95	1	702	49	1	10	37	1.47
38712--38753	21	2.0	20	86	4	57	40	11	21	26	1.88
45850--45880	1	31.0	1	100	0	62	100	0	0	0	0.00
46599--46635	2	18.5	2	100	0	74	51	0	48	0	1.00
47589--47627	17	2.2	18	90	4	62	2	20	0	76	0.90
48030--48065	2	19.0	2	88	11	58	50	0	0	50	1.00
48027--48064	18	2.2	17	95	4	67	47	0	0	52	1.00
48947--49028	28	2.9	28	88	0	128	28	19	17	35	1.94
49354--49390	9	4.2	9	89	3	58	10	21	45	21	1.82
49508--49551	18	2.7	16	80	13	54	13	20	43	22	1.87
49337--49657	161	2.0	154	93	4	543	28	11	19	40	1.86
54934--55006	28	2.6	28	82	10	103	42	23	13	20	1.88
55075--55105	10	3.1	10	95	0	53	19	0	35	45	1.51
63972--64105	16	8.5	16	74	7	114	35	33	20	10	1.87
63994--64105	32	3.5	32	79	2	136	35	33	20	10	1.87
64993--65032	16	2.5	16	80	15	55	35	32	17	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65168--65192	3	8.3	3	100	0	50	32	0	0	68	0.90
65147--65203	30	1.9	30	92	0	96	31	8	0	59	1.28
65937--65985	16	3.1	15	75	18	55	32	34	22	10	1.88
65943--65999	16	3.6	16	77	13	55	31	31	22	14	1.93
67155--67291	65	2.1	64	83	1	166	10	35	39	15	1.81
67155--67279	33	3.9	32	75	8	119	10	36	39	14	1.80
68132--68173	14	3.1	14	83	6	52	33	9	0	57	1.31
73286--73357	24	3.0	22	70	22	56	5	30	8	55	1.52
73298--73365	24	2.8	23	74	21	68	5	29	10	54	1.58
74930--74989	21	2.9	21	74	0	66	36	11	20	31	1.88
76880--76933	27	2.1	27	89	6	85	16	16	24	42	1.88
77978--78016	19	2.1	20	86	13	57	30	33	5	30	1.79
81835--81885	25	2.1	25	82	10	61	27	11	19	41	1.86
82072--82175	33	3.2	32	78	4	100	37	20	21	21	1.94
82088--82181	32	2.9	32	80	1	107	35	19	23	22	1.96
82227--82274	14	3.5	14	77	5	62	33	8	2	56	1.41
82224--82284	27	2.3	27	91	0	95	32	9	1	55	1.42
82263--82334	37	1.9	37	94	0	126	40	11	0	48	1.39
82305--82413	15	7.7	13	67	20	58	41	9	0	49	1.35
83635--83818	32	5.8	32	81	4	196	32	22	23	21	1.98
83695--83817	63	2.0	63	86	3	176	28	25	25	21	1.99
83681--83827	31	4.7	31	85	3	161	29	22	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89346--89406	28	2.1	29	81	3	70	59	3	3	34	1.30
89812--89845	3	11.3	3	100	0	68	67	0	0	32	0.91
90225--91239	416	2.5	405	82	6	1174	26	13	18	41	1.87
91738--92954	442	2.8	443	87	3	1657	25	14	17	42	1.87
93278--93354	30	2.5	31	85	4	93	44	24	14	16	1.85
93291--93349	30	1.9	30	93	3	100	40	23	15	20	1.90
99361--99385	10	2.5	10	100	0	50	0	28	0	72	0.86
102439--102506	25	2.7	24	75	18	59	47	2	7	42	1.46

Tables:   1

The End!