Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009467.1 Corchorus capsularis cultivar CVL-1 contig09488, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17149

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1786--2088
70
4.3
70
79
11
325
47
8
19
24
1.77
1794--2006
63
3.3
63
79
10
239
47
8
18
24
1.76
2570--2627
16
3.5
16
84
9
80
50
3
20
25
1.64
2549--2664
60
2.0
60
86
8
166
47
4
22
25
1.69
2705--2748
21
2.1
21
83
8
54
20
31
9
38
1.84
2935--3027
32
2.8
32
88
3
123
12
35
37
13
1.84
3166--3299
32
4.2
32
80
3
162
12
42
35
9
1.76
3166--3299
64
2.1
64
90
2
207
12
42
35
9
1.76
3166--3323
32
4.9
32
77
6
122
13
39
36
10
1.80
3368--3409
14
2.7
15
82
14
50
54
2
26
16
1.54
3437--3493
27
2.1
27
84
12
73
64
1
15
17
1.37
3466--3496
15
2.1
15
93
0
53
64
0
16
19
1.29
4101--4129
2
14.5
2
100
0
58
51
0
0
48
1.00
16220--16264
13
3.5
13
87
3
65
20
13
11
55
1.68
16261--16287
6
4.5
6
100
0
54
29
0
14
55
1.40

Tables:   1

The End!