Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009468.1 Corchorus capsularis cultivar CVL-1 contig09489, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5282
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29


Found at i:4492 original size:21 final size:21

Alignment explanation


    Indices: 4468--4512  Score: 90
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       4458 AAAAAAAAAG

                                 
       4468 AAGGAAAAATAATGGTCTGCA
          1 AAGGAAAAATAATGGTCTGCA

                                 
       4489 AAGGAAAAATAATGGTCTGCA
          1 AAGGAAAAATAATGGTCTGCA

               
       4510 AAG
          1 AAG

       4513 TTATCCCAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.49, C:0.09, G:0.24, T:0.18


Consensus pattern (21 bp):   
AAGGAAAAATAATGGTCTGCA

Found at i:4996 original size:2 final size:2

Alignment explanation


    Indices: 4985--5013  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       4975 ATCCTCTTAA

                                                        
       4985 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       5014 TAATATAGTG


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   25  0.96

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
AT

Done.