genome.fa.s9469.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009469.1 Corchorus capsularis cultivar CVL-1 contig09490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30685

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5173--5274	27	3.5	27	75	19	96	39	9	14	36	1.80
5165--5250	8	10.0	8	69	14	55	41	8	13	36	1.75
5133--6119	35	28.3	35	89	3	1452	39	11	15	34	1.83
5208--5275	27	2.5	27	88	4	102	38	10	14	36	1.81
8544--8744	100	2.0	100	100	0	402	30	9	28	30	1.89
11655--11698	16	2.8	16	86	3	63	29	18	27	25	1.98
12099--12158	23	2.6	23	83	0	84	20	30	35	15	1.93
12280--12305	4	6.5	4	100	0	52	23	0	0	76	0.78
12601--12658	25	2.3	25	88	8	91	17	27	31	24	1.97
12700--12729	15	2.0	15	93	0	51	23	33	23	20	1.97
12640--12790	39	3.8	40	86	6	193	22	30	29	17	1.96
12636--12790	40	4.0	40	86	3	208	22	30	29	17	1.97
13119--13208	25	3.6	25	71	5	92	18	28	30	22	1.97
13283--13317	9	4.0	9	85	7	54	22	0	0	77	0.78
13285--13318	17	2.0	17	94	0	59	26	0	0	73	0.83
14347--14417	36	2.0	36	88	0	106	25	22	29	22	1.99
14362--14430	36	1.9	36	87	0	102	26	24	28	20	1.99
16522--16566	16	2.9	15	83	6	54	28	20	24	26	1.99
16524--16599	15	4.9	15	75	4	71	26	14	27	31	1.95
16545--16613	31	2.2	31	94	0	120	23	8	31	36	1.85
16560--16613	16	3.5	15	74	5	54	22	5	35	37	1.77
27021--27444	198	2.1	198	86	2	575	33	17	12	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27513--27552	22	1.9	20	90	10	62	35	12	0	52	1.39

Tables:   1

The End!