Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009471.1 Corchorus capsularis cultivar CVL-1 contig09492, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33775

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28--1006
199
4.9
199
85
3
1237
34
12
18
33
1.89
1--1011
396
2.6
394
86
4
1353
35
12
18
33
1.89
2570--2665
28
3.3
28
86
5
120
43
15
7
33
1.74
2678--2759
39
2.1
40
84
8
107
20
17
2
59
1.48
4368--4410
14
3.1
14
80
10
52
67
25
4
2
1.22
4355--4390
18
1.9
19
88
5
56
69
30
0
0
0.89
6469--6497
1
29.0
1
100
0
58
0
0
0
100
0.00
12006--12218
105
2.0
105
99
0
417
35
13
29
22
1.91
21004--21309
151
2.0
151
96
0
567
39
20
15
24
1.91
21597--21673
21
3.7
21
80
16
97
40
18
11
29
1.86
21587--21674
42
2.1
42
100
0
176
40
20
11
27
1.86
21735--21837
21
4.9
21
85
2
127
36
18
13
31
1.90
21587--21949
163
2.2
163
85
4
502
34
21
13
30
1.91
21895--21949
21
2.6
21
97
0
101
32
23
16
27
1.96
21777--22016
121
2.0
121
86
2
338
33
21
14
30
1.93
26584--26618
2
18.0
2
88
5
54
51
2
0
45
1.16
29863--29890
12
2.3
12
100
0
56
25
42
25
7
1.80
30900--30933
8
4.1
8
85
7
50
58
14
2
23
1.50
31007--31036
5
5.8
5
92
7
51
80
0
0
20
0.72

Tables:   1

The End!