Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009474.1 Corchorus capsularis cultivar CVL-1 contig09495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62280

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1335--1374
2
21.5
2
85
14
59
50
0
0
50
1.00
1677--1745
31
2.2
31
89
0
102
40
21
23
14
1.90
3164--3198
3
11.7
3
100
0
70
34
0
0
65
0.93
4723--4750
14
2.0
14
100
0
56
28
14
21
35
1.92
5425--5458
12
2.7
13
86
9
52
32
0
0
67
0.91
6163--6189
6
4.5
6
100
0
54
33
0
0
66
0.92
6543--6639
52
1.9
51
87
4
142
24
9
25
40
1.85
6542--6647
50
2.1
50
82
6
135
26
8
24
40
1.83
7667--7709
12
3.5
12
93
6
77
34
16
23
25
1.95
9338--9379
21
2.0
21
100
0
84
23
28
4
42
1.74
9386--9414
2
15.0
2
92
7
51
48
0
0
51
1.00
15634--15672
7
5.4
7
90
3
60
43
0
0
56
0.99
33935--33983
17
2.9
16
85
8
62
22
20
22
34
1.97
35032--35086
3
17.3
3
81
7
56
32
3
3
60
1.32
35241--35309
32
2.1
34
89
5
106
34
7
11
46
1.68
37003--37039
15
2.3
17
86
9
51
16
0
18
64
1.29
49664--49691
13
2.2
13
100
0
56
39
14
0
46
1.44
50075--50102
14
2.0
14
100
0
56
50
21
0
28
1.49
55560--55590
7
4.6
7
92
8
55
25
16
16
41
1.88

Tables:   1

The End!