Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009479.1 Corchorus capsularis cultivar CVL-1 contig09500, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25230

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3352--3952
138
4.3
141
80
6
564
19
25
17
36
1.94
3512--4012
144
3.6
138
81
6
315
19
26
16
37
1.93
3757--4376
138
4.5
138
76
5
502
19
25
15
39
1.90
7376--7419
21
2.0
22
82
13
54
56
2
40
0
1.11
11501--11539
20
2.0
20
89
0
60
43
0
0
56
0.99
14405--14432
14
2.0
14
100
0
56
28
14
7
50
1.69
15504--15567
17
3.4
17
69
22
56
26
17
17
39
1.91
15500--15590
40
2.3
40
96
0
164
23
16
21
38
1.93
15513--15589
22
3.7
23
68
21
69
23
15
22
38
1.92
19627--19744
43
2.9
41
90
6
177
38
10
6
44
1.65
21284--21313
15
2.0
15
93
0
51
43
6
10
40
1.64
22380--22404
13
1.9
13
100
0
50
48
4
0
48
1.20

Tables:   1

The End!