Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009480.1 Corchorus capsularis cultivar CVL-1 contig09501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112019

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1434--1492
31
1.9
31
89
0
91
44
20
10
25
1.83
1618--1692
28
2.6
30
81
14
102
33
8
21
37
1.83
2948--2993
2
22.0
2
91
8
74
47
4
0
47
1.21
3659--3812
78
2.0
78
89
0
236
36
22
16
24
1.94
3943--3972
13
2.3
13
100
0
60
6
33
10
50
1.62
5069--5134
30
2.2
30
83
2
80
36
21
12
30
1.90
5408--5465
29
2.0
30
82
3
73
31
8
25
34
1.86
7245--7278
6
5.7
6
100
0
68
64
0
0
35
0.94
8656--8913
107
2.5
106
89
4
380
41
8
7
41
1.64
15860--15913
3
17.7
3
88
3
81
35
1
0
62
1.06
15917--15970
28
1.9
28
84
0
72
12
29
3
53
1.56
18816--19150
35
9.6
35
88
3
469
39
8
16
35
1.79
20006--20064
29
2.0
29
100
0
118
25
37
13
23
1.92
22180--22221
21
2.0
21
90
0
66
9
11
11
66
1.44
23806--23844
11
3.5
11
92
3
60
82
15
2
0
0.79
23813--23844
6
5.5
6
92
7
57
84
15
0
0
0.63
31494--31571
24
3.3
24
80
3
97
25
34
20
19
1.96
39868--39962
37
2.6
37
77
3
120
55
11
16
15
1.68
40082--40148
31
2.2
31
91
5
109
49
7
19
23
1.74
40180--40209
10
2.9
10
95
5
51
50
0
16
33
1.46
40856--41622
393
2.0
382
91
3
1248
38
13
15
31
1.87
42397--42429
16
2.0
17
88
5
50
33
33
9
24
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46843--46881
18
2.2
18
100
0
78
41
15
10
33
1.81
48384--48416
15
2.2
15
100
0
66
45
0
12
42
1.41
55896--55920
10
2.5
10
100
0
50
0
8
0
92
0.40
66591--66640
25
2.0
25
88
0
73
36
12
18
34
1.87
82465--82498
17
2.0
17
88
11
52
0
11
5
82
0.83
90984--91020
3
12.3
3
100
0
74
67
0
32
0
0.91
91723--91826
51
2.0
51
98
0
199
36
18
11
33
1.87
92020--92084
31
2.1
31
100
0
130
20
15
23
41
1.89
92257--92466
105
2.0
105
100
0
420
36
20
23
19
1.95
96281--96313
7
4.7
7
100
0
66
30
12
30
27
1.92
102226--102254
8
3.8
8
90
9
51
89
0
0
10
0.48
110195--110235
14
2.9
14
85
0
64
39
9
7
43
1.65
110190--110237
21
2.2
22
88
3
71
33
8
10
47
1.68

Tables:   1

The End!