Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009485.1 Corchorus capsularis cultivar CVL-1 contig09506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24686

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
345--408
32
2.0
32
100
0
128
9
28
6
56
1.55
2588--2670
22
3.8
22
71
12
73
34
9
16
38
1.82
2632--2712
22
3.5
23
76
6
76
34
12
17
35
1.87
2857--3141
22
12.8
21
70
16
123
41
8
15
33
1.78
3001--3163
88
1.9
87
81
8
197
44
9
14
32
1.76
3253--3300
19
2.5
20
93
3
80
45
12
18
22
1.83
3291--3806
22
23.7
22
68
13
183
39
9
13
37
1.78
3286--3809
44
12.0
44
68
12
217
39
9
14
36
1.79
3415--3494
23
3.5
23
84
5
83
42
5
12
40
1.64
5184--5501
161
2.0
158
92
3
530
29
20
24
25
1.99
5696--5831
30
4.6
30
87
2
186
33
25
22
17
1.96
12615--12662
21
2.3
21
89
3
71
6
25
6
62
1.42
16385--16659
109
2.5
109
91
4
437
38
11
1
48
1.48
17358--17487
66
2.0
62
92
5
215
37
11
16
33
1.85

Tables:   1

The End!