Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009489.1 Corchorus capsularis cultivar CVL-1 contig09510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 245288
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:1484 original size:323 final size:322
Alignment explanation
Indices: 1--7113 Score: 8930
Period size: 323 Copynumber: 22.2 Consensus size: 322
* *
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCTGAGTATTGTGGCAAAACT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAATT
* * * * * *
66 TAAGAAAAAAAATTTCAGGTCAATTCTCAGCCAAAATCGTGTACTAACCATCACTGCTATTGGGC
66 TCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGGC
* *
131 TAAAAACGCGTTTCGAGGCACCGGCACATTTTTGCATCATTTTTGGCAGAAAGCCTCCTTGAAAT
131 TAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAAT
* * * * *
196 ATCTCTATTTATCAAACCAAATCTCAGCCATAATGGATTTAAAGATTTGTTGTTCCGAGCATCTG
196 ATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* *
261 AATTTTGTTTCAATTTAATTAGAAATAAATTCGAAAAGAAATGGGAAAACGATATTGGAAGC
261 AATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * ** * * *
323 GTGAAAAATCCGTT--ATTTTTTTTGGGTTGTATTACATATTTTTTCCGAGTATTGAGACAAAAA
1 GTGAAAAA-CCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGC-AAAA
**
386 TTTCAGAAAAATTTTTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTG
64 TTTCAGAAAAA-AATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTG
* **
451 TGCTAAAAACGCGTTTCGAGGCACCAACACAGTTTTGCATGATTTTTGGCA-AAAGCCTCCTTGA
128 GGCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGA
* *
515 AATATCTCTATTCATCGAACCAAAACTCAACCATAATGGATTTAAGGATTTGTTTTTACGAGCAT
193 AATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCAT
*
580 CTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGAGAAAACGATATTGGAAGC
258 CTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * * * * *
645 GTGAAAAA-TCTGT--TTTTTTTTTGGGTTGAATTGCATAT-TTTTTTCCGAGTATTGAGACAAA
1 GTGAAAAACCCT-TCAATATTTTTTGCGTTAAATT--ATATATTTTTTCCGAGTATTGTGGC-AA
* *
706 AATTTCAGGAAAAAAATATTCAGGTCAATTCTTAGTCGAAATCGTGTACAAACCATCACTGTTAT
62 AATTTCA-GAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTAT
* * * * * * *
771 TGGGCTAAAAACGTGTTTCGAGGCACCGACACAGTTTTGCATAATTTTTGACAGAGAGTCTCTTT
126 TGGGCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTT
* *** * *
836 GAAATATCTCTATTCATCGATCCAAATCTCAGCCACGTTGGATTTAAGGATTTGGTTTTACGAGA
191 GAAATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGC
* * * * * *
901 ATATGAATTTTGTTCCGATTTAATTAGAAAAAAAATCGGGAAA-AAATTGGGAAAACAATACTGG
256 ATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTC-GGAAAGAAA-TGGGAAAACGATATTGG
965 AAGC
319 AAGC
*
969 GT-AACAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAATATTGTGGCAAAAT
1 GTGAA-AAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAAT
* * * * * * *
1033 TTGAGAAAAAAAAATTTTTAGGTCAATTCATAG-CCAATATCGTGTACTAACAATCACAGTGATT
65 TTCAG--AAAAAAATTTTCAGGTCAATTCTTAGTCGAA-ATCGTGTACTAACCATCACTGTTATT
**
1097 GGGCTAAAAACGCGTTTCGAGGCACCAACACAGTTTTGCATGATTTTTGGCA-AAAGCCTCCTTG
127 GGGCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTG
1161 AAATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCA
192 AAATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCA
*
1226 TCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGAGAAAACGATATTGGAAG
257 TCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAG
1291 C
322 C
* *
1292 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATAATTTTTCCGAGTATTGTGGCAAAACT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAATT
* * *
1357 TCAGAAAAAAATTTTTCAGGTCAATTCTCAGCCAAAATCGTGTACTAACCATCACTGTTATTGGG
66 TCAGAAAAAAA-TTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGG
*
1422 CTAAAAATGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAA
130 CTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAA
*
1487 TATCTCGATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCT
195 TATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCT
* * *
1552 GAATTTTGCTTCGATTTAATTAGAAATAAATTCTGAAAGAAATGAGAAAACGATATTGGAAGC
260 GAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* *
1615 GTGAAAAACCCTTCAATATTTTTTGC-TTGAATTATATATTTTTTCCGAGTATTGTGTCAAAAAT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGC-AAAAT
* * *
1679 TCCATAAAAAAAAATTTTCAGGTCAATTCTTAGTCGAACTCGTGTACTAACCATCACTGTTATTG
65 TTC--AGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTG
* * * * *
1744 TGCTAAAAATGCGTTTCGAGGAACCGGCACAGTTTTGCATGATTTTTGGCTGAGAGCCTCCTTGA
128 GGCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGA
* * * * *
1809 AATATCTCGATTCATCGAAGCAAATCTCATCCATAATGGATTTAAGGATTCGCTTTTACGAGCAT
193 AATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCAT
* *
1874 CTTAATTTTGTTTCGATTTAATCAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
258 CTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * * * *
1939 GTGAAAAATCCGTT-AATTTTTTTTG-GTTAAATTACATATTTTTTCCAATTATTGTGACAAAAA
1 GTGAAAAA-CCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGC-AAAA
** *
2002 TTTCAGAAAAATTTTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTGTTGG
64 TTTCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGG
* * * * * *
2067 GCTAAAAATGCGTTTCGAGGCACTGACACAGTATTGCATGATTTTTGGCTGAGAGCCTCCTTGAA
129 GCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAA
* * * * * * *
2132 ATATCTCTATTCATCAAATCAAATCTCAGCCACATTGGAATTAAAGATTTGTTTTTACTAGCATC
194 ATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATC
* * *
2197 TTAATTATGTTTCGATTTAATCAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
259 TGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * *
2261 GTGAAAAACCC-TCAATATTTTTTTGCGTTGAATTATATATTTTTTCCGAGTATTGTGACAAAAC
1 GTGAAAAACCCTTCAATA-TTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAAT
2325 TTCAGAAGAAAAATTTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTG
65 TTCAGAA-AAAAA-TTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTG
* * * *
2390 TGCTAAAAATGTGTTTCGAGGCACCGACACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGA
128 GGCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGA
* *** * *
2455 AATATCTCTATTCATCGAACCAAATCTCAGTCACGTTGGATTTTAGGATTTGGTTTTACGAGCAT
193 AATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCAT
* * * * *
2520 CTGAATTTTGTTTCGATTTAATTAGAAAAAAAATCAGAAAAAAATTGGGAAAACAATATTGGAAG
258 CTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAA-TGGGAAAACGATATTGGAAG
2585 C
322 C
* * * * *
2586 GTGAAAAACCCTTCAATATTTTTTGCCTTAAATTATATTTTTTTTCTGAGCATTGTGGCAAAACT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAATT
* * * ** * *
2651 TCATAAAAAAAATTTCAGGTCAATTCTCACCCAAAATCGTGTACTAACCATCATTGTTATTGGGC
66 TCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGGC
* * *
2716 TAAAAACGCGTTTCGAAGCACCGGCACATTTTTACATGATTTTTGGCAGAAAGCCTCCTTGAAAT
131 TAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAAT
* * * * * *
2781 ATCTCTATTCATCAAACCAAATCTCAGCCACATTGGATTTAAGGATTTGCTTTTACGAGCATTTT
196 ATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * *
2846 AATTTTGTTTCGATTTAATCAGAAAAAAATTCGGAAAAAAATGGGATAACGATATTGGAAGC
261 AATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * *
2908 GTGAAAAACCCTTCAATATTTTTTGTGTTAAATTATATATTTTTTCCGACTATTGTGGCAAAACT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAATT
* * *
2973 TCAGAAAAAAATTTTTCAGGTCAATTCTCAGCCAAAATCGTG---T-A-CATCACTGTTATTGGG
66 TCAGAAAAAAA-TTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGG
* * * * * * *
3033 CAAAAAACGCGTTTCGAGGCCCCGTCTCAGTATTGCATGATTTTTGGCTGAGAA-TCTCCTTGAA
130 CTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGA-AAGCCTCCTTGAA
* *
3097 ATATCTCTATTCATCGAACCAAATCTCATCCATAATGGATTTAAGGATTTGCTTTTACGAGCATC
194 ATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATC
* * * * *
3162 TTAATTATGTTTCGATTTAATCAGAAATAAATTCAGAAAGAAATGGGAAAACGATATTGGAGGC
259 TGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * * * *
3226 GTGAAAAATCCTT-TATATTTTTTTCAGTTTAATTACATATTTTTTCCGAATATTGTGGCAAAAT
1 GTGAAAAACCCTTCAATATTTTTTGC-GTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAAT
* * **
3290 TTGAGAAAAAAAATTTTCAGGTCAACTCTTAGTCGAAATCGTGTACTAGTCATCACTGTTATTGG
65 TTCAG-AAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGG
* * *
3355 GCTAAAAATGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCTGAGAA-TCTCCTTGA
129 GCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGA-AAGCCTCCTTGA
* * * * * * * *
3419 AATATCCCTATTCATCAAACCAAATCTCAGTCACATTGGAATTAAAGATTTGTTTTTACTAGCAT
193 AATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCAT
* * * * *
3484 CTTAATTTTGTTTCGATTTAATCAGAAAAAAATTCGGAAAAAAATGGGAAAACGATACTGGAAGC
258 CTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * *
3549 ATGAAAAATCCTTCAATATTTTTTTGTGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAAC
1 GTGAAAAACCCTTCAATA-TTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAAT
* * * * * *
3614 TTCATAAAAAAAATTTCAGGTTAATTCTCAGCCAAAATCGTG---------T-AC-GTTATTGGG
65 TTCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGG
* * *
3668 CT-AAAACGCATTTCGAGGCACCGGCACAATTTTGCATGATTTTTGGCAGAAAGTCTCCTTGAAA
130 CTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAA
3732 TATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCT
195 TATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCT
*
3797 GAATTTTGTTTCGATTTAATTAGAAATAAATCCGGAAAGAAATGGGAAAACGATATTGGAAGC
260 GAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * *
3860 -TAGAAAAACCCATT-ATTATTTTTTG-GTTGAATTATATATTTTTTCCGAGTACTGTGACAAAA
1 GT-GAAAAACCC-TTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGC-AAA
* *
3922 ATATCAGGAAAAAAAATTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATT
63 ATTTCA-GAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATT
* *
3987 GGGCTAAAAACGCGTTTCGAGGCACCGGCACAATTTTGTATGATTTTTGGCAGAAAGCCTCCTTG
127 GGGCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTG
* * *
4052 AAATATCTCTATTCATCGAACCAAATCTCAGCCATATTGGATTTACGGATTTGCTTTTACGAGCA
192 AAATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCA
*
4117 TCTGAATTTTGTTTCGATTTAATCAGAAATAAATTCGGAAA-ACAATGGGAAAACGATATTGGAA
257 TCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGA-AATGGGAAAACGATATTGGAA
4181 -C
321 GC
* * * *
4182 TCTAAAAAACCCTTCAATATTTTTTGCGTTAAATTATATACTTTTTCCGAATATTGTGGCAAAAT
1 -GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAAT
* * * *
4247 TTGAGAAAAAAATTTTCAGGTCAATTCTTAGCCAAAATCGTGTACTAACAATCACTGTTATTGGG
65 TTCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGG
4312 CTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAA
130 CTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAA
* *
4377 TATCTCTATTCATCGAACCAAATCTCAGCCATAATGAATTTAAGGATTTGTTTTTAGGAGCATCT
195 TATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCT
*
4442 GAATTTTGTTT-AATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
260 GAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * * * * *
4504 GTGAAAATCCGTT--ATTTTTTTTG-GTTGAATTACATATTTTTTCCGAGTATTGAGACAAAAAT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGC-AAAAT
* *
4566 TTCAGAAAAAAAAAATTT-AGGTCAATTCTTAGTCGAAATTGTGTACTAACCATCACTGTTATTG
65 TTCAG--AAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTG
* * * * *
4630 GGCTAAAAACGCGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCTGAGAA-TCTCCTTG
128 GGCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGA-AAGCCTCCTTG
* * * * *
4694 AAATATCTATATTCATCAAACCAAATCTCAGCCACATTGGATTTAAGGATTTGCTTTTACGAGCA
192 AAATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCA
* * * *
4759 ACTTAATTTTGTTTCGATTTAATCAGAAAAAAATTCGGAAA-AAATGGGAAAACGATATTGGAAG
257 TCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAG
4823 C
322 C
* *
4824 GTGAAAAAACCTTCAATATTTTTGTGCGTTAAATTATATA-TTTTTCCGAGTATTGTGGCAAAAC
1 GTGAAAAACCCTTCAATATTTTT-TGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAAT
* * * *
4888 TTCAGAAAAAATTTTTCAGGTCAATTCTCAGCCAAAATCGTG---------T-AC-GTTATTGGG
65 TTCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGG
* *
4942 CT-AAAACGCATTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTTCTTGAAA
130 CTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAA
* *
5006 TATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGCTTTTACGAGTATCT
195 TATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCT
5071 GAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
260 GAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * *
5134 GTG-AAAACCC-T---T-TTTTTTGCGTTGAATTACATATTTTTTTCCGAGAATTGTGACAAAAA
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATA-TTTTTTCCGAGTATTGTGGC-AAAA
* *
5193 TTTCAAAAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTATTATTG
64 TTTC-AGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTG
* *
5258 GGCTAAAAACGCGTTTCGAGGCACCGGCACAATTTTGCATGATTTTTGGCAGAAAGTCTCCTTGA
128 GGCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGA
*
5323 AATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTAACGAGCAT
193 AATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCAT
* ** *
5388 TTGAATTTTGTTTTAATTTAATTAGAAATAAATTCGGAAAGAAATGGAAAAACGATATTGGAAGC
258 CTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
* * * * * *
5453 GTGAAAAATCCGTT--AT-TTTTTTGGGTTGAATTACATATTTTTTCCGAGTATTGAGACAAAAA
1 GTGAAAAA-CCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGC-AAAA
* * * *
5515 TTTCA-AAAAAAAATTTCAGGCCAATTCTTAGTCGAAATCGTATACAAACCATCACTGTTATTGG
64 TTTCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGG
* * * * *
5579 GCTAAAAACGCGTTTCGAGGCACCAGCACAATTTTGCATGATTTTTGACAGAGAGTCTCCTTGAA
129 GCTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAA
* * *** *
5644 ATATCTATATTCATTGAACCAAATCTCAGCCACGTTGGATTTAAGGATTTGCTTTTACGAGCATC
194 ATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATC
* * *
5709 TGAATTTTGTTTTGATTTAATTAGAAGA-AAAATCGGAAAAAAATTGGGAAAACGATATTGGAAG
259 TGAATTTTGTTTCGATTTAATTAGAA-ATAAATTCGGAAAGAAA-TGGGAAAACGATATTGGAAG
5773 C
322 C
** **
5774 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCTAAGTATTGTGGCAAAGCT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAATT
* * * * *
5839 TCAGAAAAAAAAATTTCAGGTCAATTCTCAGCCAAAATCGTGTACTAACCATTACTGTTATTGGG
66 TCAG-AAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGG
* * * * * *
5904 CTAAAAACGCGTTTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGTCTGAGAA-TCACCTTGAA
130 CTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGA-AAGCCTCCTTGAA
* * * * *
5968 ATATCTCTATTAATCAAACCAAATCTCAGGCACATTGGATTTAAGGATTT-TCTTTTACGAGCAT
194 ATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGT-TTTTACGAGCAT
* * * * *
6032 CTTAATTTTGTTTCGATTTAATTAGAAAAAAATTTGGAAA-AAATGAGAAAATGATATTGGAAGC
258 CTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
*
6096 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCTGAGTATTGTGGCAAAATT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAATT
** * *
6161 TCA-AAAAAAA-AATCAGGTCAATTCTTAGAC-AAATTCGTGTACTAACCATCACTGTGATTGGG
66 TCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAA-TCGTGTACTAACCATCACTGTTATTGGG
* * *
6223 CTAAAAACGCGTTTCGAGGCATCGGCACAATTTTGCATGATTTTTGGCAAAAAG---CCTTG---
130 CTAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAA
* ** * * *
6282 ----TCTATTCATCGAACAAAATCTCAATCACATTAGATTTAAGGATTTGTTTTTACGAGCATCT
195 TATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCT
* *
6343 GAATTTTGTTTCGATTT-ATTAAGAAATAAATTCGGAAAAAAAAATGGGAAAACAATATTGGAAG
260 GAATTTTGTTTCGATTTAATT-AGAAATAAATTCGG--AAAGAAATGGGAAAACGATATTGGAAG
6407 C
322 C
* * * * *
6408 GTGAAAAACCCTTAAATTTTTTTTACATTGAATTATATATTTGTTT--GAGTATTGTGG------
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTT-TTTCCGAGTATTGTGGCAAAAT
* * * * * * *
6465 --C---AAAAAA--TTGAGGTCAGTTTTTGGCCGAAATCGTGTAGTAACTCATCAC-GATTTTTG
65 TTCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAAC-CATCACTG-TTATTG
** * ** * * * * *
6522 GTTTAAAAACGTGTTTC-ACGG-ACCTGGTTCTGTTTTGTATGATTTTCGGCAGAAAGTCTCATT
128 GGCTAAAAACGCGTTTCGA-GGCACC-GGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTT
* * * *
6585 AAAATATCTATATTCATCGAACCAAATCTCAACTATAATGGATTTAAGGATTT-TTTTTACGAGC
191 GAAATATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGC
* * **
6649 ATCTGAATTGTGTTTTGATTTAATTAGAAATAAATTCGGAAAGAAATATGAAAACGATATTGGAA
256 ATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAA
6714 GC
321 GC
* ** * * * *
6716 GTAAAAAACCC--CCCTTTTTTTTACGTTGAATTACATATTTTTTCCGAGTATTGT-GCAAAAAT
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGC-AAAAT
* * * * *
6778 TTAAGGAAAAAAATTTTCGGGTCAATTCTTAATCGAAATCGTGTACTAACCATCATTGTTAATGG
65 TTCA-GAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGG
* * ** * * * *
6843 GCTAAAAACGCGTTTCGTGAC-CCTAACTCAGGTTTGCATGACTTTTGGCAGAAAACCTCCTTGA
129 GCTAAAAACGCGTTTCGAGGCACC-GGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGA
* * * * * * *
6907 AATATCTTTATTCATCGAA-CAATATTTCAACCCAT--TAGATTTAAAGATTTGTTTTTGCGAGT
193 AATATCTCTATTCATCGAACCAA-ATCTC-AGCCATAATGGATTTAAGGATTTGTTTTTACGAGC
* * * * *
6969 ATCTAAATTTTGTTTCGATTTAATTAAAAATAAATTCGGAAA-AAAGGTAGGAAAACGATACTGA
256 ATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAA--TGGGAAAACGATATTGG
*
7033 AAAC
319 AAGC
* * * * * *
7037 ATGAAAAACCCTTCAATATTTTTTGCATTGAATAATATATTTTTTCTAGAGTAGTGTGGCAAGAA
1 GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTC-CGAGTATTGTGGCAA-AA
7102 TTTCAGAAAAAA
64 TTTCAGAAAAAA
7114 TGATCGGATC
Statistics
Matches: 5964, Mismatches: 661, Indels: 330
0.86 0.10 0.05
Matches are distributed among these distances:
300 28 0.00
301 59 0.01
303 15 0.00
304 8 0.00
305 21 0.00
306 32 0.01
307 43 0.01
308 40 0.01
309 263 0.04
310 100 0.02
311 270 0.05
312 72 0.01
313 5 0.00
314 1 0.00
316 6 0.00
317 11 0.00
318 302 0.05
319 321 0.05
320 565 0.09
321 269 0.05
322 1096 0.18
323 1268 0.21
324 932 0.16
325 216 0.04
326 21 0.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (322 bp):
GTGAAAAACCCTTCAATATTTTTTGCGTTAAATTATATATTTTTTCCGAGTATTGTGGCAAAATT
TCAGAAAAAAATTTTCAGGTCAATTCTTAGTCGAAATCGTGTACTAACCATCACTGTTATTGGGC
TAAAAACGCGTTTCGAGGCACCGGCACAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAAT
ATCTCTATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
AATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAAGAAATGGGAAAACGATATTGGAAGC
Found at i:8819 original size:20 final size:20
Alignment explanation
Indices: 8798--9005 Score: 155
Period size: 20 Copynumber: 10.2 Consensus size: 20
8788 CGGCGCATTG
*
8798 ACATTCAACTTTCCCAATTG
1 ACATTCAACTTTCCCAATTC
* * **
8818 ACATTGAACTTGCCTTGATTC
1 ACATTCAACTTTCC-CAATTC
* * *
8839 ACATTCAACATTCCCAAATG
1 ACATTCAACTTTCCCAATTC
* * *
8859 ACATTGAACTTGCCTTAATTC
1 ACATTCAACTTTCC-CAATTC
*
8880 ACATCCAACTTTCCCAATTC
1 ACATTCAACTTTCCCAATTC
* * **
8900 ACATTGAACTTGCCTTATTC
1 ACATTCAACTTTCCCAATTC
*
8920 ACATTCAATTTTCCCAATTC
1 ACATTCAACTTTCCCAATTC
* * ** *
8940 ACATTGAACTTGCCTTATCC
1 ACATTCAACTTTCCCAATTC
*
8960 ACATTCAATTTTCCCAATTC
1 ACATTCAACTTTCCCAATTC
* * *
8980 ACATTGAACTTGCCTTAATTC
1 ACATTCAACTTTCC-CAATTC
9001 ACATT
1 ACATT
9006 GGCCCTCAAT
Statistics
Matches: 137, Mismatches: 48, Indels: 5
0.72 0.25 0.03
Matches are distributed among these distances:
20 99 0.72
21 38 0.28
ACGTcount: A:0.29, C:0.28, G:0.06, T:0.36
Consensus pattern (20 bp):
ACATTCAACTTTCCCAATTC
Found at i:8933 original size:40 final size:41
Alignment explanation
Indices: 8798--9005 Score: 321
Period size: 41 Copynumber: 5.1 Consensus size: 41
8788 CGGCGCATTG
* *
8798 ACATTCAACTTTCCCAATTGACATTGAACTTGCCTTGATTC
1 ACATTCAACTTTCCCAATTCACATTGAACTTGCCTTAATTC
* * *
8839 ACATTCAACATTCCCAAATGACATTGAACTTGCCTTAATTC
1 ACATTCAACTTTCCCAATTCACATTGAACTTGCCTTAATTC
*
8880 ACATCCAACTTTCCCAATTCACATTGAACTTGCCTT-ATTC
1 ACATTCAACTTTCCCAATTCACATTGAACTTGCCTTAATTC
* *
8920 ACATTCAATTTTCCCAATTCACATTGAACTTGCCTT-ATCC
1 ACATTCAACTTTCCCAATTCACATTGAACTTGCCTTAATTC
*
8960 ACATTCAATTTTCCCAATTCACATTGAACTTGCCTTAATTC
1 ACATTCAACTTTCCCAATTCACATTGAACTTGCCTTAATTC
9001 ACATT
1 ACATT
9006 GGCCCTCAAT
Statistics
Matches: 155, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 77 0.50
41 78 0.50
ACGTcount: A:0.29, C:0.28, G:0.06, T:0.36
Consensus pattern (41 bp):
ACATTCAACTTTCCCAATTCACATTGAACTTGCCTTAATTC
Found at i:9291 original size:122 final size:122
Alignment explanation
Indices: 9073--9294 Score: 322
Period size: 122 Copynumber: 1.8 Consensus size: 122
9063 AAGACAGGAA
** *
9073 GGATATGCTCAGCTCCAATGGGGAAACAACTGCAAAGGAGAAGAAACGTTATCCAGAAACCATCA
1 GGATATGCTCAGCTCCAATGGGGAAACAACTGCAAAGGAGAAGAAACACTATCAAGAAACCATCA
* *
9138 AAGCAGAATAAGGAAACTCACAACAACCAAATCTGAAGGCAATCCTCGCTGCTACAG
66 AAGCAGAAAAAGGAAAATCACAACAACCAAATCTGAAGGCAATCCTCGCTGCTACAG
* *
9195 GGATATGCTCAGCTCCTATGGGGAGACAACTGCAGAA-GAGAAGAAACACTATCAAGAAACCAAT
1 GGATATGCTCAGCTCCAATGGGGAAACAACTGCA-AAGGAGAAGAAACACTATCAAGAAACC-AT
* * *
9259 -AGAGCAGAAAAAGGAAAATCACAGCAAGCAAATCTG
64 CAAAGCAGAAAAAGGAAAATCACAACAACCAAATCTG
9295 TGCAATGGCA
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
122 84 0.95
123 4 0.05
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.14
Consensus pattern (122 bp):
GGATATGCTCAGCTCCAATGGGGAAACAACTGCAAAGGAGAAGAAACACTATCAAGAAACCATCA
AAGCAGAAAAAGGAAAATCACAACAACCAAATCTGAAGGCAATCCTCGCTGCTACAG
Found at i:16828 original size:2 final size:2
Alignment explanation
Indices: 16823--16902 Score: 62
Period size: 2 Copynumber: 42.0 Consensus size: 2
16813 TTTTAAAGTT
* * *
16823 TA TA TA TA TA TA TT TA TA TA TA TA TA TA GTA TA AA T- TA TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
16865 AA CA AA TA TA TA -A TA TA TA -A T- TA TA TA TA -A TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16903 GGTCGGTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
1 5 0.08
2 57 0.89
3 2 0.03
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (2 bp):
TA
Found at i:17562 original size:20 final size:20
Alignment explanation
Indices: 17515--17562 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
17505 GTAAATTATT
17515 AAATATTTATTTATTAGTATA
1 AAATA-TTATTTATTAGTATA
* *
17536 TAGTATTATTTATTAGTA-A
1 AAATATTATTTATTAGTATA
17555 AACATATT
1 AA-ATATT
17563 TGACTTAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 2 0.09
20 17 0.77
21 3 0.14
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (20 bp):
AAATATTATTTATTAGTATA
Found at i:17630 original size:2 final size:2
Alignment explanation
Indices: 17625--17695 Score: 78
Period size: 2 Copynumber: 37.0 Consensus size: 2
17615 TAAAAAAAGC
* *
17625 AT AT AT AT -T A- AT AT AT AT AT AT AT AT AT AT AT TT GAA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
*
17666 A- AT AT AT AT AT AT AT AT AC AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17696 TTCGGGGCGG
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
1 4 0.07
2 54 0.93
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:21790 original size:1 final size:1
Alignment explanation
Indices: 21784--21812 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
21774 GGCTAATCGC
21784 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21813 TCCTTCTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:40817 original size:36 final size:33
Alignment explanation
Indices: 40777--40862 Score: 100
Period size: 33 Copynumber: 2.5 Consensus size: 33
40767 ACTTTACTGG
*
40777 TGGTGGAGGTGGAGAAGTTCTTGGATACTCGTGAGA
1 TGGTGGAGGAGGAGAAG---TTGGATACTCGTGAGA
* *
40813 TGGTGGCGGAGGTGAAGTTGGATACTCGTGAGA
1 TGGTGGAGGAGGAGAAGTTGGATACTCGTGAGA
* *
40846 TGGTGGCGGAGGTGAAG
1 TGGTGGAGGAGGAGAAG
40863 GTGTGTATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
33 33 0.70
36 14 0.30
ACGTcount: A:0.21, C:0.08, G:0.47, T:0.24
Consensus pattern (33 bp):
TGGTGGAGGAGGAGAAGTTGGATACTCGTGAGA
Found at i:40839 original size:33 final size:33
Alignment explanation
Indices: 40797--40862 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
40787 GGAGAAGTTC
40797 TTGGATACTCGTGAGATGGTGGCGGAGGTGAAG
1 TTGGATACTCGTGAGATGGTGGCGGAGGTGAAG
40830 TTGGATACTCGTGAGATGGTGGCGGAGGTGAAG
1 TTGGATACTCGTGAGATGGTGGCGGAGGTGAAG
40863 GTGTGTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.09, G:0.45, T:0.24
Consensus pattern (33 bp):
TTGGATACTCGTGAGATGGTGGCGGAGGTGAAG
Found at i:41065 original size:45 final size:45
Alignment explanation
Indices: 41014--41108 Score: 181
Period size: 45 Copynumber: 2.1 Consensus size: 45
41004 CCTTTGGTGG
41014 TGGTGGCGGCGGTGATGATTGACTAGGCGTGGGAACATAGTGAAC
1 TGGTGGCGGCGGTGATGATTGACTAGGCGTGGGAACATAGTGAAC
*
41059 TGGTGGCGGCGGTGGTGATTGACTAGGCGTGGGAACATAGTGAAC
1 TGGTGGCGGCGGTGATGATTGACTAGGCGTGGGAACATAGTGAAC
41104 TGGTG
1 TGGTG
41109 TGGGTGGAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.20, C:0.13, G:0.44, T:0.23
Consensus pattern (45 bp):
TGGTGGCGGCGGTGATGATTGACTAGGCGTGGGAACATAGTGAAC
Found at i:41475 original size:57 final size:57
Alignment explanation
Indices: 41401--41523 Score: 237
Period size: 57 Copynumber: 2.2 Consensus size: 57
41391 GAGAATAGGT
*
41401 TGGTGGTGGCGGTGATGGTGGGGAATGGTAAGAAGGCACTGGTGAAGAGTGTGATGA
1 TGGTGGTGGCGGTGATGGTGGAGAATGGTAAGAAGGCACTGGTGAAGAGTGTGATGA
41458 TGGTGGTGGCGGTGATGGTGGAGAATGGTAAGAAGGCACTGGTGAAGAGTGTGATGA
1 TGGTGGTGGCGGTGATGGTGGAGAATGGTAAGAAGGCACTGGTGAAGAGTGTGATGA
41515 TGGTGGTGG
1 TGGTGGTGG
41524 TGGAGGATGT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.22, C:0.05, G:0.50, T:0.24
Consensus pattern (57 bp):
TGGTGGTGGCGGTGATGGTGGAGAATGGTAAGAAGGCACTGGTGAAGAGTGTGATGA
Found at i:64734 original size:19 final size:19
Alignment explanation
Indices: 64710--64746 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
64700 TTTGGACCCA
64710 AAACGGT-GATGAAACGGTC
1 AAACGGTAG-TGAAACGGTC
64729 AAACGGTAGTGAAACGGT
1 AAACGGTAGTGAAACGGT
64747 GTACTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.38, C:0.14, G:0.32, T:0.16
Consensus pattern (19 bp):
AAACGGTAGTGAAACGGTC
Found at i:74778 original size:1 final size:1
Alignment explanation
Indices: 74772--74801 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
74762 CACTGCATAG
74772 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
74802 CATTGGGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:76803 original size:19 final size:19
Alignment explanation
Indices: 76779--76817 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
76769 ATGCTTATAA
76779 TTTGGTTTTCATATTAGTT
1 TTTGGTTTTCATATTAGTT
76798 TTTGGTTTTCATATTAGTT
1 TTTGGTTTTCATATTAGTT
76817 T
1 T
76818 CAACATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (19 bp):
TTTGGTTTTCATATTAGTT
Found at i:83416 original size:31 final size:31
Alignment explanation
Indices: 83378--83438 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
83368 GTTTTGCATT
83378 TAAAAAGATTAAGTATGCAGGACAGATAATG
1 TAAAAAGATTAAGTATGCAGGACAGATAATG
*
83409 TAAAAAGATTAAGTATGTAGGACAGATAAT
1 TAAAAAGATTAAGTATGCAGGACAGATAAT
83439 TTTAAACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.49, C:0.05, G:0.21, T:0.25
Consensus pattern (31 bp):
TAAAAAGATTAAGTATGCAGGACAGATAATG
Found at i:90975 original size:59 final size:59
Alignment explanation
Indices: 90883--91001 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
90873 ACATAGGTTA
* *
90883 GCTAAATTGAATGTTAATCATGTTTGGTGCGGAGTCTTCCTCCTAGCGTTTGTAATCCG
1 GCTAAATTGAATGTTAACCATGTTTGGTGCGGAGTCTTCCTCCTAGCGTTTGTAACCCG
90942 GCTAAATTGAATGTTAACCATGTTTGGTGCGGAGTCTTCCTCCTAGCGTTTGTAACCCG
1 GCTAAATTGAATGTTAACCATGTTTGGTGCGGAGTCTTCCTCCTAGCGTTTGTAACCCG
91001 G
1 G
91002 ACTTTTTCTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (59 bp):
GCTAAATTGAATGTTAACCATGTTTGGTGCGGAGTCTTCCTCCTAGCGTTTGTAACCCG
Found at i:99676 original size:202 final size:197
Alignment explanation
Indices: 99335--99740 Score: 546
Period size: 202 Copynumber: 2.0 Consensus size: 197
99325 AAAACAGAAA
** * *
99335 TTACAATGGCAAATTATATGATACACCTGGAGTTTAGCAGACTACATAAACGGGTCCTGAAAGGT
1 TTACAATGGCAAATTATACAATACACCTGGAGTTTAGCAGACTACACAAACGAGTCCTGAAAGGT
* * *
99400 GACATGTGTCTTATAAGGACTAGATTGAATTATTTAAAACTTAATTAATTAAAAAAATGGACATG
66 GACATGTGTCCTATAAGGACTAAATTGAACTATTTAAAACTTAATTAATTAAAAAAATGGACATG
* * *
99465 TGTCAACTCCACAACCCGCTTGTGGAGTCCAAAATTTACACCA-CGGGTATATCAAATAATTACC
131 TGTCAACTCCACAACCAGCTTATGGAGTCCAAAATTTACA-CAGCCGGTATATCAAATAATTACC
*
99529 CTT
195 ATT
* *
99532 TTACAATGGCAAATTATACAATACACCGTCAGTGGAGTTTAGCAGACTACACAAGCGAGTCTTG-
1 TTACAATGGCAAATTATACAATACA-C--C--TGGAGTTTAGCAGACTACACAAACGAGTCCTGA
* * * * *
99596 AGGGATGACATGTGTCCTCTAGGGACTAAATTGAGCTATTTAAAACTTAATTAATTCAAAAAATG
61 AAGG-TGACATGTGTCCTATAAGGACTAAATTGAACTATTTAAAACTTAATTAATTAAAAAAATG
* * *
99661 GACATGTGTCAACTCCACAACCATCTTATGGAGTTCAAAATTTACACAGCCGGTGTATCAAATAA
125 GACATGTGTCAACTCCACAACCAGCTTATGGAGTCCAAAATTTACACAGCCGGTATATCAAATAA
99726 TTACCATT
190 TTACCATT
99734 TTACAAT
1 TTACAAT
99741 ACCACCAATA
Statistics
Matches: 181, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
197 23 0.13
198 1 0.01
200 1 0.01
201 5 0.03
202 151 0.83
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (197 bp):
TTACAATGGCAAATTATACAATACACCTGGAGTTTAGCAGACTACACAAACGAGTCCTGAAAGGT
GACATGTGTCCTATAAGGACTAAATTGAACTATTTAAAACTTAATTAATTAAAAAAATGGACATG
TGTCAACTCCACAACCAGCTTATGGAGTCCAAAATTTACACAGCCGGTATATCAAATAATTACCA
TT
Found at i:113587 original size:103 final size:98
Alignment explanation
Indices: 113435--113615 Score: 229
Period size: 103 Copynumber: 1.8 Consensus size: 98
113425 TAGCTAAAAA
* * *
113435 AATTAAACTTGTATTCACTTAACAGTGTACAACTAAACTTGTTCAAGTTGAATCGATGATATATA
1 AATTAAACCTGTATTCACTTAACAGTGTACAACTAAACTTGTACAAGTTGAATC-A-G-T-GATA
113500 TACAATTAAACTTGTCCGAGTTGAATCAACGGTATCC
62 TACAATTAAACTTGTCCGAGTTGAATCAACGGTATCC
* ** * *
113537 AATTAAACCTGT-TTCCACTTTAACAGTTTATGACTAAACTTGTACGAGTTGAATCAGTGGTATA
1 AATTAAACCTGTATT-CAC-TTAACAGTGTACAACTAAACTTGTACAAGTTGAATCAGTGATATA
113601 CAATTAAACTTGTCC
64 CAATTAAACTTGTCC
113616 AAATCAAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
99 19 0.28
100 1 0.01
101 3 0.04
102 15 0.22
103 31 0.45
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (98 bp):
AATTAAACCTGTATTCACTTAACAGTGTACAACTAAACTTGTACAAGTTGAATCAGTGATATACA
ATTAAACTTGTCCGAGTTGAATCAACGGTATCC
Found at i:114383 original size:26 final size:26
Alignment explanation
Indices: 114347--114401 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
114337 TTTTGCGATT
114347 TCATTTGAAAGCCTGTTGTCAACCTC
1 TCATTTGAAAGCCTGTTGTCAACCTC
114373 TCATTTGAAAGCCTGTTGTCAACCTC
1 TCATTTGAAAGCCTGTTGTCAACCTC
114399 TCA
1 TCA
114402 AGATATAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.35
Consensus pattern (26 bp):
TCATTTGAAAGCCTGTTGTCAACCTC
Found at i:123741 original size:17 final size:18
Alignment explanation
Indices: 123714--123748 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
123704 CCCCTTATTA
123714 TTACAAAATATAATCAAT
1 TTACAAAATATAATCAAT
123732 TTAC-AAATATAATCAAT
1 TTACAAAATATAATCAAT
123749 GCTTTACGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.34
Consensus pattern (18 bp):
TTACAAAATATAATCAAT
Found at i:129084 original size:21 final size:21
Alignment explanation
Indices: 129058--129100 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
129048 GGCCTATAGA
129058 ATGAAGAGTCTTAAACTCGAG
1 ATGAAGAGTCTTAAACTCGAG
*
129079 ATGAAGAGTTTTAAACTCGAG
1 ATGAAGAGTCTTAAACTCGAG
129100 A
1 A
129101 CCTCTGCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.26
Consensus pattern (21 bp):
ATGAAGAGTCTTAAACTCGAG
Found at i:133792 original size:24 final size:24
Alignment explanation
Indices: 133764--133814 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
133754 TTCTGGGTTT
*
133764 TGAATTTGGTGTT-CATTGTCTTTG
1 TGAATTTGGTGTTAC-TTATCTTTG
133788 TGAATTTGGTGTTACTTATCTTTG
1 TGAATTTGGTGTTACTTATCTTTG
133812 TGA
1 TGA
133815 TGGTCTTGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.53
Consensus pattern (24 bp):
TGAATTTGGTGTTACTTATCTTTG
Found at i:142910 original size:20 final size:20
Alignment explanation
Indices: 142873--142912 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
142863 TTAAAGTTAC
**
142873 GTTTAGTAAAACGGTGCGAT
1 GTTTAGTAAAACAATGCGAT
*
142893 GTTTAGTAGAACAATGCGAT
1 GTTTAGTAAAACAATGCGAT
142913 AGCGATGTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.30
Consensus pattern (20 bp):
GTTTAGTAAAACAATGCGAT
Found at i:143387 original size:2 final size:2
Alignment explanation
Indices: 143382--143406 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
143372 ACACATTTTT
143382 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
143407 TTAGTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:150660 original size:45 final size:45
Alignment explanation
Indices: 150596--150688 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
150586 GCAATGGATG
* *
150596 ATTAAACGAGTTCTGCATGAGAATGATACATAACACATTGCTTTA
1 ATTAAACGAGTTCTGCATGAGAACGATACATAACACACTGCTTTA
*
150641 ATTAAACGAGTTTTGCATGAGAACGATACATAACACACTGCTTTA
1 ATTAAACGAGTTCTGCATGAGAACGATACATAACACACTGCTTTA
150686 ATT
1 ATT
150689 GTCTCCATGC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (45 bp):
ATTAAACGAGTTCTGCATGAGAACGATACATAACACACTGCTTTA
Found at i:151321 original size:2 final size:2
Alignment explanation
Indices: 151314--151339 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
151304 AAGTATAAGG
151314 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
151340 GGAGATGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:192863 original size:22 final size:23
Alignment explanation
Indices: 192816--192862 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
192806 TGTCTAACTC
* *
192816 AAGGTTTTTATTAGCAAGAAAAA
1 AAGGTTTTTATCAACAAGAAAAA
192839 AAGGTTTTTATCAACAAGAAAAA
1 AAGGTTTTTATCAACAAGAAAAA
192862 A
1 A
192863 GTTACTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.06, G:0.15, T:0.28
Consensus pattern (23 bp):
AAGGTTTTTATCAACAAGAAAAA
Found at i:196936 original size:13 final size:13
Alignment explanation
Indices: 196920--196947 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
196910 TATGTCCCTC
196920 ATATACTATTTGT
1 ATATACTATTTGT
196933 ATATACTATTTGT
1 ATATACTATTTGT
196946 AT
1 AT
196948 TTTAACATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (13 bp):
ATATACTATTTGT
Found at i:198704 original size:2 final size:2
Alignment explanation
Indices: 198697--198733 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
198687 AAGTAACAAC
*
198697 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
198734 TTTTTAGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:204337 original size:2 final size:2
Alignment explanation
Indices: 204325--204355 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
204315 TATTTAAGTA
204325 AT AT AT GAT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
204356 GATGTGGGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:211507 original size:23 final size:23
Alignment explanation
Indices: 211472--211516 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
211462 TACTCTCTCC
*
211472 GTCTCAGTTGAGCCTC-GTTTTTG
1 GTCTCAGTCGAGCC-CAGTTTTTG
*
211495 GTCTTAGTCGAGCCCAGTTTTT
1 GTCTCAGTCGAGCCCAGTTTTT
211517 TGGAGATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 1 0.05
23 18 0.95
ACGTcount: A:0.11, C:0.22, G:0.24, T:0.42
Consensus pattern (23 bp):
GTCTCAGTCGAGCCCAGTTTTTG
Found at i:212758 original size:6 final size:6
Alignment explanation
Indices: 212747--212798 Score: 77
Period size: 6 Copynumber: 8.7 Consensus size: 6
212737 GATCACAGTA
* * *
212747 AAGATG AAGATG AAGATG AAGATG AAGATG ATGATG ATGATG ATGATG
1 AAGATG AAGATG AAGATG AAGATG AAGATG AAGATG AAGATG AAGATG
212795 AAGA
1 AAGA
212799 AAAGCTATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.46, C:0.00, G:0.33, T:0.21
Consensus pattern (6 bp):
AAGATG
Found at i:212781 original size:3 final size:3
Alignment explanation
Indices: 212749--212795 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
212739 TCACAGTAAA
* * * *
212749 GAT GAA GAT GAA GAT GAA GAT GAA GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
212796 AGAAAAGCTA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.43, C:0.00, G:0.34, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:215793 original size:29 final size:31
Alignment explanation
Indices: 215761--215827 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
215751 ATGCAATTTG
215761 GGATATAACGTTAC-AAAA-CAAACAATTAA
1 GGATATAACGTTACGAAAATCAAACAATTAA
* *
215790 GGATATAACGTTACGAAAATCGAGCAATTAA
1 GGATATAACGTTACGAAAATCAAACAATTAA
215821 GGATATA
1 GGATATA
215828 GTCCGCTAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 14 0.41
30 4 0.12
31 16 0.47
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.22
Consensus pattern (31 bp):
GGATATAACGTTACGAAAATCAAACAATTAA
Found at i:215995 original size:31 final size:31
Alignment explanation
Indices: 215957--216034 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
215947 CCCTAACTAA
*
215957 TTATATCCTTAATTGCTTGAAATCGAAAACG
1 TTATATCCTTAATTGCTCGAAATCGAAAACG
*
215988 TTATATCCTTAATTACTCGAAATCGAAAACG
1 TTATATCCTTAATTGCTCGAAATCGAAAACG
*
216019 TTATATCCTAAATTGC
1 TTATATCCTTAATTGC
216035 ATGTTTTGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (31 bp):
TTATATCCTTAATTGCTCGAAATCGAAAACG
Found at i:217028 original size:3 final size:3
Alignment explanation
Indices: 217020--217072 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
217010 GAAAATTAGG
* * *
217020 ATT ATT ATT GTT GTT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
217068 ATT AT
1 ATT AT
217073 AAAATACGGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:217209 original size:31 final size:31
Alignment explanation
Indices: 217140--217249 Score: 134
Period size: 31 Copynumber: 3.6 Consensus size: 31
217130 TTTGCTGCCG
* * * **
217140 CAAGCAATTAAGGATATAACG-TTACAAAAT
1 CAAGCAATTAAGGATATAAAGTTTTCGATTT
* *
217170 -AAGCAATTAAGGATATAACGTTTTTGATTT
1 CAAGCAATTAAGGATATAAAGTTTTCGATTT
*
217200 CGAGCAATTAAGGATATAAAGTTTTCGATTT
1 CAAGCAATTAAGGATATAAAGTTTTCGATTT
217231 CAAGCAATTAAGGATATAA
1 CAAGCAATTAAGGATATAA
217250 TCAGTTAGGG
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
29 20 0.29
30 4 0.06
31 45 0.65
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (31 bp):
CAAGCAATTAAGGATATAAAGTTTTCGATTT
Found at i:217453 original size:29 final size:31
Alignment explanation
Indices: 217377--217445 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
217367 GCTCTAACGG
217377 GTTATATCCTTAATTGCTCGTTTTTGGTAAC
1 GTTATATCCTTAATTGCTCGTTTTTGGTAAC
*
217408 GTTATATCCTTAATTGCTTG-TTTT-GTAAC
1 GTTATATCCTTAATTGCTCGTTTTTGGTAAC
217437 GTTATATCC
1 GTTATATCC
217446 CAAATTGCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
29 14 0.38
30 4 0.11
31 19 0.51
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
GTTATATCCTTAATTGCTCGTTTTTGGTAAC
Found at i:224768 original size:14 final size:14
Alignment explanation
Indices: 224731--224760 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
224721 AAAAAGAGTG
224731 AAAAAAGAAAAGAA
1 AAAAAAGAAAAGAA
224745 AAAAAAGAAAA-AA
1 AAAAAAGAAAAGAA
224758 AAA
1 AAA
224761 GAGAGAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAGAA
Found at i:233946 original size:12 final size:12
Alignment explanation
Indices: 233929--233953 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
233919 GCTTTAGGCG
233929 AGAAAAAGAAGA
1 AGAAAAAGAAGA
233941 AGAAAAAGAAGA
1 AGAAAAAGAAGA
233953 A
1 A
233954 AGAGGCTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAAGA
Found at i:235396 original size:6 final size:6
Alignment explanation
Indices: 235389--235425 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
235379 ACCACCACCA
*
235389 CAACCA CAACCT CAACCT CAACCT CAACCT CAACCT C
1 CAACCT CAACCT CAACCT CAACCT CAACCT CAACCT C
235426 CTAGTACAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.35, C:0.51, G:0.00, T:0.14
Consensus pattern (6 bp):
CAACCT
Found at i:235404 original size:12 final size:12
Alignment explanation
Indices: 235379--235425 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
235369 AAACCATCCC
* *
235379 ACCACCACCACA
1 ACCACAACCTCA
235391 ACCACAACCTCA
1 ACCACAACCTCA
*
235403 ACCTCAACCTCA
1 ACCACAACCTCA
*
235415 ACCTCAACCTC
1 ACCACAACCTC
235426 CTAGTACAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.36, C:0.53, G:0.00, T:0.11
Consensus pattern (12 bp):
ACCACAACCTCA
Found at i:235774 original size:21 final size:21
Alignment explanation
Indices: 235750--235791 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
235740 GGTTTTAAAA
*
235750 TTATGTAACCTTTTTGGAAGC
1 TTATGTAACCCTTTTGGAAGC
**
235771 TTATGTTCCCCTTTTGGAAGC
1 TTATGTAACCCTTTTGGAAGC
235792 GCTGCGTAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (21 bp):
TTATGTAACCCTTTTGGAAGC
Found at i:237624 original size:328 final size:327
Alignment explanation
Indices: 236889--239558 Score: 2291
Period size: 328 Copynumber: 8.1 Consensus size: 327
236879 TTTTACATTG
*
236889 AGACTCATTGAAATATCTATATTCATCTAACGAAATCTCA-CTCACATTGGATTTAAGGATTTGT
1 AGACTCATT-AAATATCTATATTCATCTAACCAAATCTCAGC-CACATTGGATTTAAGGATTTGT
*
236953 TTTTACGAGCATCCG-AATCCGGTTTCGATTTAATTAGAAATTAATTCGTAAAAAAAAAAAGGAA
64 TTTTACGAGCATCAGAAAT-CGGTTTCGATTTAATTAGAAATTAATTC-----AAAAAAAA-GAA
* * * * * *
237017 AAACGATGTTAGAAGCGTGAAACA-CCCTTCAATCTTTTTGGCGTTGACTTATATATTTTTTATT
122 AAACGATATTAGAAGCGTGAAA-AGCCCTTCAATTTTTTTGGCATTGAATTATACATTTTTTATG
* * * * * *
237081 AGTATTGTGGACAAAAATTGAAGAAAAATCTTTCGGGTCAATTTCGGAAAAATTTAAACCAAAAT
186 AGTATTGTGGTCAAAAATTGAAGAAAAATCTTTCGGGTCAATTTCTGTAAAATTTTAGCCGAAAT
* * *
237146 CGTGTACTAACTATCAAGG-TTTTGGCTAAAAACGCGTTCCGGAGCCCCTGCTTAGTTTTGCATG
251 CGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGG-GCCCCGGCTCAGTTTTGCATG
*
237210 ATTTTTGACGCCA
315 ATTTTTGGCGCCA
237223 AGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTT
1 AGACTCATT-AAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTT
* * * *
237288 TTTACGAGCATCAGAATTCGGTTTCGATTTAAGTAGAAATTAATTCACAAAAAA-AAAAACAATA
65 TTTACGAGCATCAGAAATCGGTTTCGATTTAATTAGAAATTAATTCAAAAAAAAGAAAAACGATA
* * * *
237352 TTAGAAGTGTGAAAAGCGCTTCAATTTTTGTTGGCATTGAGTTATAAATTTTTTATGAGTATTGT
130 TTAGAAGCGTGAAAAGCCCTTCAATTTTT-TTGGCATTGAATTATACATTTTTTATGAGTATTGT
* * * * *
237417 GGTTAAAAATTGAAGAAAAAACTTTCTGGTCAATTTCTATAAAATTTAAAG-CGAAATCGTGTAC
194 GGTCAAAAATTGAAGAAAAATCTTTCGGGTCAATTTCTGTAAAATTT-TAGCCGAAATCGTGTAC
* * *
237481 TAACTATCACGGTTTTTTTTTGGGCTAAAAACGCATTCCGGGCCCCGGTTCAGTTTTGCAAGA-T
258 TAACTATCACGG----TTTTT-GGCTAAAAACGCGTTCCGGGCCCCGGCTCAGTTTTGCATGATT
*
237545 TTTGGCGTCA
318 TTTGGCGCCA
* * *
237555 AGACTCATT-AA-ATCTATATTCATCTTAGCAAATTTCAGCCACATTGGATTTAAGGATTTG-TT
1 AGACTCATTAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTT
* ** * * *
237617 TTACGAGCATCTGAAATATGTTTCGATTTAATTAGACATTAATTAGGAACAAAAATAGGATAAAC
66 TTACGAGCATCAGAAATCGGTTTCGATTTAATTAGAAATTAATT--CAA-AAAAA-A-GAAAAAC
* * * ** * * * *
237682 AATATTAGAAGCGTGACAAGCCCTTCACTCATTCTAGCGTTGAATTATATATTTTTTATGAGTAT
126 GATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCATTGAATTATACATTTTTTATGAGTAT
* * * * *
237747 TGTGG-CTAAAAATTGAGGAAAAAT-TTTCAGGG-CAGTTTGTGTAAAATTTTGGCTGAAATCGT
191 TGTGGTC-AAAAATTGAAGAAAAATCTTTC-GGGTCAATTTCTGTAAAATTTTAGCCGAAATCGT
* *** * * * * * *
237809 ATACTAA-TGATTACAATTTTTTTGGCTAAAAACGCGTTTCGAAGCCTCGACTCTGTTTTGCTTG
254 GTACTAACT-A-T-CACGGTTTTTGGCTAAAAACGCGTTCCG-GGCCCCGGCTCAGTTTTGCATG
* *
237873 ATTTTTGGTGCCT
315 ATTTTTGGCGCCA
* * * * * * **
237886 AGTCTAATTAAATTATCTATATTCATCTAAACAAATCTCAGCCACAATGAATTGAAAAATTTGTT
1 AGACTCATTAAA-TATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTT
* * * *
237951 TTCACGAGCATCAGAAACCGAG-TTAGATTTAATTAGAAATTAATTC--GAAAAA-AAAAACGAT
65 TTTACGAGCATCAGAAATCG-GTTTCGATTTAATTAGAAATTAATTCAAAAAAAAGAAAAACGAT
* * * * * *
238012 ATTAGAAGCGTGAAAAGTCTTTCAATATTTTTGGCAATGAATTATATATTTTTTTATGAATATTG
129 ATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCATTGAATTATACA-TTTTTTATGAGTATTG
* * * * * *
238077 TGGCCAAAAATTGAGGAAAAATCATTCGAGTCAATTT-TCGTAAAATTTTAACCAAAATCGTGTA
193 TGGTCAAAAATTGAAGAAAAATCTTTCGGGTCAATTTCT-GTAAAATTTTAGCCGAAATCGTGTA
* * * * * * *
238141 -TTACCATCATGTTTTTTTTGTTGCTAAAAACGAGTTTCGGGACCCGGCTCAGTTTTGCATGATT
257 CTAACTATCACG--GTTTTTG--GCTAAAAACGCGTTCCGGGCCCCGGCTCAGTTTTGCATGATT
*
238205 TTTGGTGCCA
318 TTTGGCGCCA
* * * *
238215 A-ATTTC-TCGAAATATCTATA-TCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATTTGC
1 AGA-CTCAT-TAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGT
* * * * * *
238277 TTTTACGAGTC-TCAGAAACCGGTTTCGATTTAATTAGAAAATAAGTCGAAAAAAGGGAAAACGA
64 TTTTACGAG-CATCAGAAATCGGTTTCGATTTAATTAGAAATTAATTCAAAAAAAAGAAAAACGA
* ** * *
238341 TATTAGAAGCGTGAAAAGTCCTTCAATTAGTTTGG-AGTTGAATTATATATTATTTTATGAGTGT
128 TATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCA-TTGAATTATACATT-TTTTATGAGT-A
* * * * * *
238405 TTGTGG-CAAAAAAGTGAGGAAAAACCTTCTAC--ATC-ATCATT-TGCAATATTTTAGCCGAAA
190 TTGTGGTC-AAAAATTGAAGAAAAATCTT-T-CGGGTCAAT--TTCTGTAAAATTTTAGCCGAAA
* * * ** *
238465 TCGTGTACTAACCATCACGGTTTTTGGCTGAAAATGCGTTCCGGTTCCCGACTCAGTTTTGCATG
250 TCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGGGCCCCGGCTCAGTTTTGCATG
* *
238530 ATTTTTGACACCA
315 ATTTTTGGCGCCA
* * * * * * * * *
238543 AGACTCCTTGAAAAATATATATTCAACTGACTAAATCTAAGCC-CTACTGGATTTAAGGAATTGT
1 AGACTCATT-AAATATCTATATTCATCTAACCAAATCTCAGCCAC-ATTGGATTTAAGGATTTGT
* * *
238607 TTTTACGAGCATCAG-AATCATGTTTCGATTTAATTAAAAATTAATCCTCAAAAAAATAGGAAAA
64 TTTTACGAGCATCAGAAATC-GGTTTCGATTTAATTAGAAATTAAT--TCAAAAAAA-AGAAAAA
* ** * *
238671 CAGATATTAGAAACGTGAAAAGCCCTTCAAAATTTTTGGCATTGAATTATTCATTTTTTATTAGT
125 C-GATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCATTGAATTATACATTTTTTATGAGT
* * * * * *
238736 ATT-TTGTCCAAAATCTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTTGCCGAAATCG
189 ATTGTGGTCAAAAAT-TGAAGAAAAATCTTTCGGGTCAATTTCTGTAAAATTTTAGCCGAAATCG
* * * ** * *
238800 TGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTCTGGTTCCCGGTTCAGTTTTGCATAATT
253 TGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGGGCCCCGGCTCAGTTTTGCATGATT
* *
238865 TTTGACACCA
318 TTTGGCGCCA
* * * * * *
238875 AGACTCCTTGAAAAATATATATTCAACTGACCAAATCTCAGCC-CTATTGGATTTAAGGAATTGT
1 AGACTCATT-AAATATCTATATTCATCTAACCAAATCTCAGCCAC-ATTGGATTTAAGGATTTGT
* * * *
238939 TTTTACGAGCATTC-G-AATCATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAATAGGAAAA
64 TTTTACGAGCA-TCAGAAATC-GGTTTCGATTTAATTAGAAATTAATTC-AAAAAAA-AGAAAAA
* * * * * * *
239002 CTGATATTCGAAGTGCGAAAAGCCCTTCAAATTTTTTGGCCTTGAATTATTCATTTTTT-TTAGT
125 C-GATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCATTGAATTATACATTTTTTATGAGT
* *
239066 ATT-TTGTCCAAAAATTG-AGAAAAATCTTTCGGGTCAATTTTTGTAAAATTTCT-GCCGAAATC
189 ATTGTGGT-CAAAAATTGAAGAAAAATCTTTCGGGTCAATTTCTGTAAAATTT-TAGCCGAAATC
** * * *** *
239128 GTGTACTAACTATCACGGTTTGGGGCTGAAAACGCTTTCC-GGTTACGGCTCAGTTTTGCATAAT
252 GTGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGGGCCCCGGCTCAGTTTTGCATGAT
* *
239192 TTTTAGCACCA
317 TTTTGGCGCCA
* * * * * ** *
239203 AGACTCCTTGAAAAATATATATTCAACTGATTAAATCTCAGCC-CTATTGGATTTAAGGAATTGT
1 AGACTCATT-AAATATCTATATTCATCTAACCAAATCTCAGCCAC-ATTGGATTTAAGGATTTGT
* * ** * * *
239267 TTTTACGAGCATGAGAATTATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACT
64 TTTTACGAGCATCAGAAATCGGTTTCGATTTAATTAGAAATTAAT--TCAAAAAAAAGAAAAAC-
* * * * * *
239332 GATATTAGAAGCATGAAAAGCCCTTCAAATTTTTTGGCAATAAATTATTCATTTTTTATTAGTAG
126 GATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCATTGAATTATACATTTTTTATGAGTA-
* * * * *
239397 TT-T-GTCCAAAAACTGAGGAAAAATCTTTCGGGTCAATTTTTGCT-CAATTTTTGCCGAAATCG
190 TTGTGGT-CAAAAATTGAAGAAAAATCTTTCGGGTCAATTTCTG-TAAAATTTTAGCCGAAATCG
* * ** *
239459 TGTACTAAC-ATCACGGTTTTTCGCTGAAAACGCGTTTCCGGTTCCCGGCTCAGTTTTGTATGAT
253 TGTACTAACTATCACGGTTTTTGGCTAAAAACGCG-TTCCGGGCCCCGGCTCAGTTTTGCATGAT
*
239523 TTTTGGCACCA
317 TTTTGGCGCCA
* * *
239534 AGACTCCTTGAAAAATATATATTCA
1 AGACTCATT-AAATATCTATATTCA
239559 ATTTTTGCAA
Statistics
Matches: 1975, Mismatches: 272, Indels: 181
0.81 0.11 0.07
Matches are distributed among these distances:
326 4 0.00
327 152 0.08
328 424 0.21
329 280 0.14
330 251 0.13
331 205 0.10
332 286 0.14
333 93 0.05
334 238 0.12
335 41 0.02
336 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (327 bp):
AGACTCATTAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTT
TTACGAGCATCAGAAATCGGTTTCGATTTAATTAGAAATTAATTCAAAAAAAAGAAAAACGATAT
TAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCATTGAATTATACATTTTTTATGAGTATTGTGG
TCAAAAATTGAAGAAAAATCTTTCGGGTCAATTTCTGTAAAATTTTAGCCGAAATCGTGTACTAA
CTATCACGGTTTTTGGCTAAAAACGCGTTCCGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGC
CA
Found at i:238256 original size:661 final size:654
Alignment explanation
Indices: 236898--239479 Score: 1837
Period size: 661 Copynumber: 3.9 Consensus size: 654
236888 GAGACTCATT
* *
236898 GAAATATCTATATTCATCTAACGAAATCTCA-CTCACATTGGATTTAAGGATTTGTTTTTACGAG
1 GAAATATCTATATTCATCTAACCAAATCTCAGC-CACATTGGATTTAAGGATTTGCTTTTACGAG
* * *
236962 CATCCG-AATCCGGTTTCGATTTAATTAGAAATTAATTCGTAAAAAAAAAAAGGAAAAACGATGT
65 CATCAGAAAT-CGGTTTCGATTTAATTAGAAATTAATT-G---GAAAAAAAAGG-AAAACGATAT
* * * *
237026 TAGAAGCGTGAAACACCCTTCAATCTTTTTGGCGTTGACTTATATATTTTTTATTAGTATTGTGG
124 TAGAAGCGTGAAA-GCCCTTCAATC-ATTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGG
* *
237091 ACAAAAATTGAAGAAAAATCTTTCGGGTCAATTTCGGAAAAATTTAAACCAAAATCGTGTACTAA
187 -CAAAAATTGAGGAAAAATCTTTCGGGTCAATTTCGGAAAAATTTAAACCAAAATCGTATACTAA
*
237156 CTATCAAGGTTTTGGCTAAAAACGCGTTCCGGAGCCCCTGCTTAGTTTTGCATGATTTTTGACGC
251 CTATCAAGGTTTTGGCTAAAAACGCGTTCCGAAGCCCCTGCTTAGTTTTGCATGATTTTTGACGC
* * * * * **
237221 CAAGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTG
316 CAAGACTAATTGAAATATCTATATTCATCTAAACAAATCTCAGCCACAATGAATTGAAAAATTTG
* ** *
237286 TTTTTACGAGCATCAGAATTCGGTTTCGATTTAAGTAGAAATTAATTCACAAAAAAAAAAACAAT
381 TTTTCACGAGCATCAGAAACCGGTTTAGATTTAAGTAGAAATTAATT-ACAAAAAAAAAAACAAT
* * * * *
237351 ATTAGAAGTGTGAAAAGCGCTTCAATTTTTGTTGGCATTGAGTTATAAATTTTTTATGAGTATTG
445 ATTAGAAGCGTGAAAAGCGCTTCAATATTTGTTGGCAATGAATTATAAATTTTTTATGAATATTG
** * * *
237416 TGGTTAAAAATTGAAGAAAAAACTTTCTGGTCAATTTCTATAAAATTTAAAGCGAAATCGTGTAC
510 TGGCCAAAAATTGAAGAAAAAACATTCTGGTCAATTTCTATAAAATTTAAACCAAAATCGTGTAC
* * *
237481 TAACTATCACGGTTTTTTTTTGGGCTAAAAACGCATTCCGGGCCCCGGTTCAGTTTTGCAAGATT
575 TAACCATCACGGTTTTTTTTTGGGCTAAAAACGCATTCCGGGACCCGGCTCAGTTTTGCAAGATT
*
237546 TTGGCGTCAAGACTC
640 TTGGCGCCAAGACTC
* * *
237561 -ATTAA-ATCTATATTCATCTTAGCAAATTTCAGCCACATTGGATTTAAGGATTTG-TTTTACGA
1 GA--AATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGCTTTTACGA
* ** * *
237623 GCATCTGAAATATGTTTCGATTTAATTAGACATTAATTAGGAACAAAAATAGGATAAACAATATT
64 GCATCAGAAATCGGTTTCGATTTAATTAGAAATTAATT-GGAA-AAAAA-AGGA-AAACGATATT
* *
237688 AGAAGCGTGACAAGCCCTTCACTCATTCTAGCGTTGAATTATATATTTTTTATGAGTATTGTGGC
125 AGAAGCGTGA-AAGCCCTTCAATCATT-TGGCGTTGAATTATATATTTTTTATGAGTATTGTGGC
* * *** **
237753 TAAAAATTGAGGAAAAAT-TTTCAGGG-CAGTTT-GTGTAAAATTTTGGCTGAAATCGTATACTA
188 -AAAAATTGAGGAAAAATCTTTC-GGGTCAATTTCG-GAAAAATTTAAACCAAAATCGTATACTA
** * * *
237815 A-TGATTACAATTTTTTTGGCTAAAAACGCGTTTCGAAGCCTC-GACTCT-GTTTTGCTTGATTT
250 ACT-A-T-CAA-GGTTTTGGCTAAAAACGCGTTCCGAAGCCCCTG-CT-TAGTTTTGCATGATTT
** * *
237877 TTGGTGCCTAGTCTAATT-AAATTATCTATATTCATCTAAACAAATCTCAGCCACAATGAATTGA
309 TTGACGCCAAGACTAATTGAAA-TATCTATATTCATCTAAACAAATCTCAGCCACAATGAATTGA
* *
237941 AAAATTTGTTTTCACGAGCATCAGAAACCGAG-TTAGATTTAATTAGAAATTAATT-CGAAAAAA
373 AAAATTTGTTTTCACGAGCATCAGAAACCG-GTTTAGATTTAAGTAGAAATTAATTACAAAAAAA
* * *
238004 AAAACGATATTAGAAGCGTGAAAAGTC-TTTCAATATTT-TTGGCAATGAATTATATATTTTTTT
437 AAAACAATATTAGAAGCGTGAAAAG-CGCTTCAATATTTGTTGGCAATGAATTATA-AATTTTTT
* * * *
238067 ATGAATATTGTGGCCAAAAATTGAGGAAAAATCATTC-GAGTCAATTT-TCGTAAAATTTTAACC
500 ATGAATATTGTGGCCAAAAATTGAAGAAAAAACATTCTG-GTCAATTTCT-ATAAAATTTAAACC
* * * *
238130 AAAATCGTGTA-TTACCATCA-TG-TTTTTTTTGTTGCTAAAAACG-AGTTTCGGGACCCGGCTC
563 AAAATCGTGTACTAACCATCACGGTTTTTTTTTG-GGCTAAAAACGCA-TTCCGGGACCCGGCTC
* *
238191 AGTTTTGCATGATTTTTGGTGCCAA-ATTTCTC
626 AGTTTTGCAAGA-TTTTGGCGCCAAGA---CTC
*
238223 GAAATATCTATA-TCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATTTGCTTTTACGAGT
1 GAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGCTTTTACGAG-
* * * * *
238287 C-TCAGAAACCGGTTTCGATTTAATTAGAAAATAAGTCG-AAAAAAGGGAAAACGATATTAGAAG
65 CATCAGAAATCGGTTTCGATTTAATTAGAAATTAATTGGAAAAAAAAGGAAAACGATATTAGAAG
* * * *
238350 CGTGAAAAGTCCTTCAATTAGTTTGGAGTTGAATTATATATTATTTTATGAGTGTTTGTGGCAAA
130 CGTG-AAAGCCCTTCAATCA-TTTGGCGTTGAATTATATATT-TTTTATGAGT-ATTGTGGC-AA
* * * * * * * * *
238415 AAAGTGAGGAAAAACCTTCTAC--ATCATCATTT--GCAATATTTTAGCCGAAATCGTGTACTAA
190 AAATTGAGGAAAAATCTT-T-CGGGTCA--ATTTCGGAAAAATTTAAACCAAAATCGTATACTAA
* * * * * *
238476 CCATCACGGTTTTTGGCTGAAAATGCGTTCCG--GTTCCC-GACTCAGTTTTGCATGATTTTTGA
251 CTATCAAGG-TTTTGGCTAAAAACGCGTTCCGAAG-CCCCTG-CTTAGTTTTGCATGATTTTTGA
* ** * * * * * * * * *
238538 CACCAAGACTCCTTGAAAAATATATATTCAACT-GACTAAATCTAAGCC-CTACTGGATTTAAGG
313 CGCCAAGACTAATTGAAATATCTATATTCATCTAAAC-AAATCTCAGCCAC-AATGAATTGAA-A
* * ** * * *
238601 AA-TTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAATTAAAAATTAATCCT-CAAAAAAAT
375 AATTTGTTTTCACGAGCATCAGAAACCGGTTTAGATTTAAGTAGAAATTAAT--TAC-AAAAAA-
* * * * **
238664 AGGAAAACAGATATTAGAAACGTGAAAAGCCCTTCAAAATTT-TTGGCATTGAATTATTCATTTT
436 A--AAAACA-ATATTAGAAGCGTGAAAAGCGCTTCAATATTTGTTGGCAATGAATTATAAATTTT
* * * * * * * * * ** ***
238728 TTATTAGTATTTTGTCC-AAAATCTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTTGC
498 TTATGAATATTGTGGCCAAAAAT-TGAAGAAAAAACATTCTGGTCAATTTCTATAAAATTTAAAC
* * * * ** *
238792 CGAAATCGTGTACTAACCATCACGG----TTTTT-GGCTGAAAACGCGTTCTGGTTCCCGGTTCA
562 CAAAATCGTGTACTAACCATCACGGTTTTTTTTTGGGCTAAAAACGCATTCCGGGACCCGGCTCA
* *
238852 GTTTTGCATA-ATTTTTGACACCAAGACTCC
627 GTTTTGCA-AGA-TTTTGGCGCCAAGACT-C
* * * * * *
238882 TTGAAAAATATATATTCAACTGACCAAATCTCAGCC-CTATTGGATTTAAGGAATTGTTTTTACG
1 --GAAATATCTATATTCATCTAACCAAATCTCAGCCAC-ATTGGATTTAAGGATTTGCTTTTACG
* * ***
238946 AGCATTC-G-AATCATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAATAGGAAAACTGATAT
63 AGCA-TCAGAAATC-GGTTTCGATTTAATTAGAAATTAATTGGAAAAAAA-AGGAAAAC-GATAT
* * * ** * * *
239009 TCGAAGTGCGAAAAGCCCTTCAAATTTTTTGGCCTTGAATTAT-TCATTTTTT-TTAGTATTTTG
124 TAGAAGCGTG-AAAGCCCTTC-AATCATTTGGCGTTGAATTATAT-ATTTTTTATGAGTATTGTG
* ** * *** * *
239072 TCCAAAAATTGA-GAAAAATCTTTCGGGTCAATTTTTGTAAAATTTCTGCCGAAATCGTGTACTA
186 -GCAAAAATTGAGGAAAAATCTTTCGGGTCAATTTCGGAAAAATTTAAACCAAAATCGTATACTA
* * * * *** * * *
239136 ACTATCACGGTTTGGGGCTGAAAACGCTTTCCG--GTTACGGCTCAGTTTTGCATAATTTTT-AG
250 ACTATCAAGGTTT-TGGCTAAAAACGCGTTCCGAAGCCCCTGCTTAGTTTTGCATGATTTTTGA-
* ** * * * * ** * * * *
239198 CACCAAGACTCCTTGAAAAATATATATTCAACTGATTAAATCTCAGCC-CTATTGGATTTAAGGA
313 CGCCAAGACTAATTGAAATATCTATATTCATCTAAACAAATCTCAGCCAC-AATGAATTGAA-AA
* * **** * * * *
239262 A-TTGTTTTTACGAGCATGAGAATTATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGG
376 ATTTGTTTTCACGAGCATCAGAAACCGGTTTAGATTTAAGTAGAAATTAAT--TACAAAAAAA--
* * * * * **
239326 AAAACTGATATTAGAAGCATGAAAAGCCCTTCAA-ATTTTTTGGCAATAAATTATTCATTTTTTA
437 AAAAC-AATATTAGAAGCGTGAAAAGCGCTTCAATATTTGTTGGCAATGAATTATAAATTTTTTA
* * * * * * * * * * * *** *
239390 TTAGTAGTT-TGTCCAAAAACTGAGGAAAAATCTTTCGGGTCAATTTTTGCT-CAATTTTTGCCG
501 TGAATA-TTGTGGCCAAAAATTGAAGAAAAAACATTCTGGTCAATTTCT-ATAAAATTTAAACCA
239453 AAATCGTGTACTAA-CATCACGGTTTTT
564 AAATCGTGTACTAACCATCACGGTTTTT
239480 CGCTGAAAAC
Statistics
Matches: 1589, Mismatches: 229, Indels: 203
0.79 0.11 0.10
Matches are distributed among these distances:
656 5 0.00
657 147 0.09
658 66 0.04
659 197 0.12
660 295 0.19
661 309 0.19
662 192 0.12
663 266 0.17
664 68 0.04
665 40 0.03
666 4 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (654 bp):
GAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGCTTTTACGAGC
ATCAGAAATCGGTTTCGATTTAATTAGAAATTAATTGGAAAAAAAAGGAAAACGATATTAGAAGC
GTGAAAGCCCTTCAATCATTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCAAAAATTG
AGGAAAAATCTTTCGGGTCAATTTCGGAAAAATTTAAACCAAAATCGTATACTAACTATCAAGGT
TTTGGCTAAAAACGCGTTCCGAAGCCCCTGCTTAGTTTTGCATGATTTTTGACGCCAAGACTAAT
TGAAATATCTATATTCATCTAAACAAATCTCAGCCACAATGAATTGAAAAATTTGTTTTCACGAG
CATCAGAAACCGGTTTAGATTTAAGTAGAAATTAATTACAAAAAAAAAAACAATATTAGAAGCGT
GAAAAGCGCTTCAATATTTGTTGGCAATGAATTATAAATTTTTTATGAATATTGTGGCCAAAAAT
TGAAGAAAAAACATTCTGGTCAATTTCTATAAAATTTAAACCAAAATCGTGTACTAACCATCACG
GTTTTTTTTTGGGCTAAAAACGCATTCCGGGACCCGGCTCAGTTTTGCAAGATTTTGGCGCCAAG
ACTC
Found at i:239500 original size:991 final size:979
Alignment explanation
Indices: 236831--239559 Score: 2622
Period size: 991 Copynumber: 2.7 Consensus size: 979
236821 TCCATCATGA
* * * * * * * * * ***
236831 TTTTTGCCTAAAAACACGTTTCG-GGTCTGGACTCAATCTTGCATGATTTTTTACATTGAGACTC
1 TTTTTGGCTAAAAACGCGTTTCGAAGCCTCGACTCAGTTTTGCATAATTTTTGACACCAAGACTC
* *
236895 ATTGAAATATCTATATTCATCTAACGAAATCTCA-CTCACATTGGATTTAAGGATTTGTTTTTAC
66 ATTGAAATATCTATATTCATCTAACCAAATCTCAGC-CACATTGGATTTAAGGAATTGTTTTTAC
* *
236959 GAGCATCCGAATCCGGTTTCGATTTAATTAGAAATTAATTCGTAAAAAAAAAAAGGAAAAACGAT
130 GAGCATTCGAAT-CAGTTTCGATTTAATTAGAAATTAA-TC-T---AAAAAAAAGG-AAAACGAT
* * * *
237024 GTTAGAAGCGTGAAACA-CCCTTCAATCTTTTTGGCGTTGACTTATATATTTTTTATTAGTATTG
188 ATTAGAAGCGTGAAA-AGCCCTTCAATATTTTTGGCATTGAATTATATATTTTTT-TTAGTATTG
* * *
237088 TGGACAAAAATTGAAGAAAAATCTTTCGGGTCAA-TTTCGGAAAAATTTAAACCAAAATCGTGTA
251 TGGCCAAAAATTG-AGAAAAATCTTTCGGGTCAATTTTC-GTAAAATTT-TACCAAAATCGTGTA
* * *
237152 CTAACTATCAAGGTTT-TGGCTAAAAACGCGTTCCGGAGCCCCTGCTTAGTTTTGCATGATTTTT
313 CTAACTATCAAGGTTTGTGGCTAAAAACGCTTTCCGGA--CCCGGCTCAGTTTTGCATGATTTTT
*
237216 GACGCCAAGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGG
376 G-CGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCC-CATTGGATTTAAGG
* * *
237281 ATTTGTTTTTACGAGCATCAGAATTCGGTTTCGATTTAAGTAGAAATTAATTCACAAAAAAA--A
439 ATTTGTTTTTACGAGCATCAGAATTCGGTTTCGATTTAATTAAAAATTAA-TCAAAAAAAAAGGA
* * * * * *
237344 AAACAATATTAGAAGTGTGAAAAGCGCTTCAATTTTTGTTGGCATTGAGTTATAAATTTTTTATG
503 AAACGATATTAGAAGCGTGAAAAGCCCTTCAAATTTT-TTGGCATTGAATTAT-TATTTTTTATG
* * * * * * **
237409 AGTA-TTGTGGT-TAAAAATTGAAGAAAAAACTTTCTGGTCAATTTCTATAAAATTTAAAG-CGA
566 AGTAGTT-T-GTCAAAAAACTGAGGAAAAAACTTTC-GGTCAATTTTTGT-CAATTT-TTGCCGA
* * ** *
237471 AATCGTGTACTAACTATCACGGTTTTTTTTTGGGCTAAAAACGCATTCCGGGCCCCGGTTCAGTT
626 AATCGTGTACTAAC-ATCACGG----TTTTT-GGCTGAAAACGCGTTCCGGTTCCCGGCTCAGTT
* ** * * * * * *
237536 TTGCAAGA-TTTTGGCGTCAAGACTCATT---AAATCTATATTCATCTTAGCAAATTTCAGCCAC
685 TTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCAACTGAGCAAATCTAAGCCAC
* * * * * *
237597 ATTGGATTTAAGGATTTGTTTTACGAGCATCTGAAATATGTTTCGATTTAATTAGACATTAATTA
750 ACTGGATTTAAGGAATTGTTTTACGAGCATCAGAAATATGTTTCGATTTAATTAAAAATTAATCA
* * * ** *
237662 GGAACAAAAATAGGATAAACAATATTAGAAGCGTGACAAGCCCTTCACTCATTCTAGCGTTGAAT
815 GCAACAAAAATAGGATAAACAATATTAGAAACGTGAAAAGCCCTTCACAAATTCTAGCATTGAAT
* *
237727 TATATATTTTTTATGAGTATTGTGGCTAAAAATTGAGGAAAAATTTTCAGGGCAGTTTGTGTAAA
880 TATATATTTTTTATGAGTATTGTGGCTAAAAATTGAGGAAAAATTTTCAGGGCAATTTGTGCAAA
* ** **
237792 ATTTTGGCTGAAATCGTATACTAATGATTACAATT
945 ATTTTGGCCGAAATCGTATACTAACCATTACAAGG
* * * *** * * *
237827 TTTTTGGCTAAAAACGCGTTTCGAAGCCTCGACTCTGTTTTGCTTGATTTTTGGTGCCTAGTCTA
1 TTTTTGGCTAAAAACGCGTTTCGAAGCCTCGACTCAGTTTTGCATAATTTTTGACACCAAGACTC
* * * * * *
237892 ATT-AAATTATCTATATTCATCTAAACAAATCTCAGCCACAATGAATTGAA-AAATTTGTTTTCA
66 ATTGAAA-TATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGAA-TTGTTTTTA
* * **
237955 CGAGCA-TCAGAAACCGAG-TTAGATTTAATTAGAAATTAAT-TCGAAAAAA--AAAACGATATT
129 CGAGCATTC-G-AATC-AGTTTCGATTTAATTAGAAATTAATCTAAAAAAAAGGAAAACGATATT
* * * *
238015 AGAAGCGTGAAAAGTCTTTCAATATTTTTGGCAATGAATTATATATTTTTTTATGAATATTGTGG
191 AGAAGCGTGAAAAGCCCTTCAATATTTTTGGCATTGAATTATATATTTTTTT-T-AGTATTGTGG
* * *
238080 CCAAAAATTGAGGAAAAATCATTCGAGTCAATTTTCGTAAAATTTTAACCAAAATCGTGTA-TTA
254 CCAAAAATTGA-GAAAAATCTTTCGGGTCAATTTTCGTAAAATTTT-ACCAAAATCGTGTACTAA
* * * * * *
238144 CCATCATGTTTTTTTTGTTGCTAAAAACGAGTTTCGGGACCCGGCTCAGTTTTGCATGATTTTTG
317 CTATCAAG----GTTTGTGGCTAAAAACG-CTTTCCGGACCCGGCTCAGTTTTGCATGATTTTT-
* * * * *
238209 GTGCCAA-ATTTCTCGAAATATCTATA-TCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGA
376 GCGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCC-CATTGGATTTAAGGA
* ** * *
238272 TTTGCTTTTACGAGTC-TCAGAAACCGGTTTCGATTTAATTAGAAAA-TAAGTC-GAAAAAAGGG
440 TTTGTTTTTACGAG-CATCAGAATTCGGTTTCGATTTAATTA-AAAATTAA-TCAAAAAAAAAGG
* *
238334 AAAACGATATTAGAAGCGTGAAAAGTCCTTC-AATTAGTTTGG-AGTTGAATTATATATTATTTT
502 AAAACGATATTAGAAGCGTGAAAAGCCCTTCAAATT-TTTTGGCA-TTGAATTAT-TATT-TTTT
* * * *
238397 ATGAGT-GTTTGTGGCAAAAAAGTGAGGAAAAACCTTCTAC-ATC-ATCATTTG-CAATATTTTA
563 ATGAGTAGTTTGT--CAAAAAACTGAGGAAAAAACTT-T-CGGTCAAT-TTTTGTCAAT-TTTT-
* *
238458 GCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAATGCGTTCCGGTTCCCGACTCAGTT
621 GCCGAAATCGTGTACTAA-CATCACGGTTTTTGGCTGAAAACGCGTTCCGGTTCCCGGCTCAGTT
*
238523 TTGCATGATTTTTGACACCAAGACTCCTTGAAAAATATATATTCAACTGA-CTAAATCTAAGCC-
685 TTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCAACTGAGC-AAATCTAAGCCA
238586 CTACTGGATTTAAGGAATTGTTTTTACGAGCATCAG-AATCATGTTTCGATTTAATTAAAAATTA
749 C-ACTGGATTTAAGGAATTG-TTTTACGAGCATCAGAAAT-ATGTTTCGATTTAATTAAAAATTA
** * *
238650 ATCCTCAA-AAAAATAGGA-AAACAGATATTAGAAACGTGAAAAGCCCTTCA-AAATTTTTGGCA
811 ATCAGCAACAAAAATAGGATAAACA-ATATTAGAAACGTGAAAAGCCCTTCACAAA-TTCTAGCA
* * * *
238712 TTGAATTAT-TCATTTTTTATTAGTATTTTGTC-CAAAATCTGAGGAAAAATCTTTC-GGGTCAA
874 TTGAATTATAT-ATTTTTTATGAGTATTGTGGCTAAAAAT-TGAGGAAAAAT-TTTCAGGG-CAA
* * * *
238774 TTTTTGCAAAATTTTTGCCGAAATCGTGTACTAACCA-T-CACGG
935 TTTGTGCAAAATTTTGGCCGAAATCGTATACTAACCATTACAAGG
* *** **
238817 TTTTTGGCTGAAAACGCG-TTCTGGTTCC-CGGTTCAGTTTTGCATAATTTTTGACACCAAGACT
1 TTTTTGGCTAAAAACGCGTTTC-GAAGCCTCGACTCAGTTTTGCATAATTTTTGACACCAAGACT
* * * * *
238880 CCTTGAAAAATATATATTCAACTGACCAAATCTCAGCC-CTATTGGATTTAAGGAATTGTTTTTA
65 CATTGAAATATCTATATTCATCTAACCAAATCTCAGCCAC-ATTGGATTTAAGGAATTGTTTTTA
*
238944 CGAGCATTCGAATCATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAATAGGAAAACTGATAT
129 CGAGCATTCGAATCA-GTTTCGATTTAATTAGAAATTAAT-CTAAAAAAA-AGGAAAAC-GATAT
* * * * *
239009 TCGAAGTGCGAAAAGCCCTTCAA-ATTTTTTGGCCTTGAATTAT-TCATTTTTTTTAGTATTTTG
190 TAGAAGCGTGAAAAGCCCTTCAATA-TTTTTGGCATTGAATTATAT-ATTTTTTTTAGTATTGTG
* * * *
239072 TCCAAAAATTGAGAAAAATCTTTCGGGTCAATTTTTGTAAAATTTCTGCCGAAATCGTGTACTAA
253 GCCAAAAATTGAGAAAAATCTTTCGGGTCAATTTTCGTAAAATTT-TACCAAAATCGTGTACTAA
* * * *** * *
239137 CTATCACGGTTTGGGGCTGAAAACGCTTTCCGGTTACGGCTCAGTTTTGCATAATTTTTAGCACC
317 CTATCAAGGTTTGTGGCTAAAAACGCTTTCCGGACCCGGCTCAGTTTTGCATGATTTTT-GCGCC
* * * * ** *
239202 AAGACTCCTTGAAAAATATATATTCAACTGATTAAATCTCAGCCCTATTGGATTTAAGGAATTGT
381 AAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCC-ATTGGATTTAAGGATTTGT
* **
239267 TTTTACGAGCATGAGAATTATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACT
445 TTTTACGAGCATCAGAATTCGGTTTCGATTTAATTAAAAATTAAT-C-AAAAAAAAAGGAAAAC-
* * * *
239332 GATATTAGAAGCATGAAAAGCCCTTCAAATTTTTTGGCAATAAATTATTCATTTTTTATTAGTAG
507 GATATTAGAAGCGTGAAAAGCCCTTCAAATTTTTTGGCATTGAATTATT-ATTTTTTATGAGTAG
* *
239397 TTTGTCCAAAAACTGAGGAAAAATCTTTCGGGTCAATTTTTGCTCAATTTTTGCCGAAATCGTGT
571 TTTGTCAAAAAACTGAGGAAAAAACTTTC-GGTCAATTTTTG-TCAATTTTTGCCGAAATCGTGT
* *
239462 ACTAACATCACGGTTTTTCGCTGAAAACGCGTTTCCGGTTCCCGGCTCAGTTTTGTATGATTTTT
634 ACTAACATCACGGTTTTTGGCTGAAAACGCG-TTCCGGTTCCCGGCTCAGTTTTGCATGATTTTT
239527 GGCACCAAGACTCCTTGAAAAATATATATTCAA
698 GGCACCAAGACTCCTTGAAAAATATATATTCAA
239560 TTTTTGCAAA
Statistics
Matches: 1412, Mismatches: 233, Indels: 181
0.77 0.13 0.10
Matches are distributed among these distances:
987 36 0.03
988 122 0.09
989 198 0.14
990 238 0.17
991 306 0.22
992 223 0.16
993 90 0.06
994 21 0.01
995 47 0.03
996 27 0.02
997 100 0.07
998 4 0.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (979 bp):
TTTTTGGCTAAAAACGCGTTTCGAAGCCTCGACTCAGTTTTGCATAATTTTTGACACCAAGACTC
ATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGAATTGTTTTTACG
AGCATTCGAATCAGTTTCGATTTAATTAGAAATTAATCTAAAAAAAAGGAAAACGATATTAGAAG
CGTGAAAAGCCCTTCAATATTTTTGGCATTGAATTATATATTTTTTTTAGTATTGTGGCCAAAAA
TTGAGAAAAATCTTTCGGGTCAATTTTCGTAAAATTTTACCAAAATCGTGTACTAACTATCAAGG
TTTGTGGCTAAAAACGCTTTCCGGACCCGGCTCAGTTTTGCATGATTTTTGCGCCAAGACTCCTT
GAAATATCTATATTCATCTAACCAAATCTCAGCCCATTGGATTTAAGGATTTGTTTTTACGAGCA
TCAGAATTCGGTTTCGATTTAATTAAAAATTAATCAAAAAAAAAGGAAAACGATATTAGAAGCGT
GAAAAGCCCTTCAAATTTTTTGGCATTGAATTATTATTTTTTATGAGTAGTTTGTCAAAAAACTG
AGGAAAAAACTTTCGGTCAATTTTTGTCAATTTTTGCCGAAATCGTGTACTAACATCACGGTTTT
TGGCTGAAAACGCGTTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGA
AAAATATATATTCAACTGAGCAAATCTAAGCCACACTGGATTTAAGGAATTGTTTTACGAGCATC
AGAAATATGTTTCGATTTAATTAAAAATTAATCAGCAACAAAAATAGGATAAACAATATTAGAAA
CGTGAAAAGCCCTTCACAAATTCTAGCATTGAATTATATATTTTTTATGAGTATTGTGGCTAAAA
ATTGAGGAAAAATTTTCAGGGCAATTTGTGCAAAATTTTGGCCGAAATCGTATACTAACCATTAC
AAGG
Found at i:239957 original size:457 final size:457
Alignment explanation
Indices: 239099--240016 Score: 1287
Period size: 457 Copynumber: 2.0 Consensus size: 457
239089 ATCTTTCGGG
* * * * *
239099 TCAATTTTTGTAAAATTTCTGCCGAAATCGTGTACTAACTATCACGGTTTGGGGCTGAAAACGCT
1 TCAATTTTTGCAAAATTTCTGCCAAAATCGTGTACTAACCATCACGGTTTGGGGCTGAAAACCCG
* * * *
239164 TTCCGGTTACGGCTCAGTTTTGCATAATTTTTAGCACCAAGACTCCTTGAAAAATATATATTCAA
66 TTCCGGTCACAGCTCAGTTTTGCATAATTTTTAGAAACAAGACTCCTTGAAAAATATATATTCAA
* ** * * *
239229 CTGATTAAATCTCAGCCCTATTGGATTTAAGGAATTGTTTTTACGAGCATGAGAATTATGTTTCG
131 CTAACCAAATCTCAGCCCTACTGGATTGAAGGAATTGTTTTTACGAGCATCAGAATTATGTTTCG
239294 ATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCATGAAAAGCCCTTCA
196 ATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCATGAAAAGCCCTTCA
239359 AATTTTTTGGCAATAAATTATTCATTTTTTATTAGTAGTTTGTCCAAAAACTGAGGAAAAATCTT
261 AATTTTTTGGCAATAAATTATTCATTTTTTATTAGTAGTTTGTCCAAAAACTGAGGAAAAATCTT
** * * *
239424 TCGGGTCAATTTTTGCTCAATTTTTGCCGAAATCGTGTACTAACATCACGGTTTTTCGCTGAAAA
326 TCAAGTCAATTATTGATAAATTTTTGCCGAAATCGTGTACTAACATCACGGTTTTTCGCTGAAAA
* * *
239489 CGCGTTTCCGGTTCCCGGCTCAGTTTTGTATGATTTTTGGCACCAAGACTCCTTGAAAAATATAT
391 CGCGTTTCCGGTTCCCGACTCAGTTTTGCATGATTTTTAGCACCAAGACTCCTTGAAAAATATAT
239554 AT
456 AT
* *
239556 TCAATTTTTGCAAAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTAT-TGGCTGAAAACCC
1 TCAATTTTTGCAAAATTTCTGCCAAAATCGTGTACTAACCATCACGGTT-TGGGGCTGAAAACCC
* * * * * * *
239620 GTTCCGGGTCCCAGCTCAG-TTTGCATGATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTC
65 GTTCC-GGTCACAGCTCAGTTTTGCATAATTTTTAGAAACAAGACTCCTTGAAAAATATATATTC
239684 AACTAACCAAATCTCAGCCCTACTGGATTGAAGG-ATTGTTTTT-CTGAGCATCAGAATTATGTT
129 AACTAACCAAATCTCAGCCCTACTGGATTGAAGGAATTGTTTTTAC-GAGCATCAGAATTATGTT
* ** * *
239747 TCGATTTAATTAAAAATTAATCTTGGGAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCC
193 TCGATTTAATTAAAAATTAATCCT-AAAAAAAAAGGAAAACTGATATTAGAAGCATGAAAAGCCC
* * *
239812 TTC-AATTTTTTGGCATTGAATTATTCAATTTTTTATTAGTA-TTTCGTCCAAAAATTGA-GAAA
257 TTCAAATTTTTTGGCAATAAATTATTC-ATTTTTTATTAGTAGTTT-GTCCAAAAACTGAGGAAA
* *
239874 AATCTTTCAAGTCAATTATT-ATAAAATTTTTGCTGAAAATCGTGTACTAACCATCATGGTTTTT
320 AATCTTTCAAGTCAATTATTGAT-AAATTTTTGCCG-AAATCGTGTACTAA-CATCACGGTTTTT
* * *
239938 GGCTGAAAACGCG-TTCCGGTTCCTGACTCAGTTTTGCATGTTTTTTAGCACCAAGACTCCTTGA
382 CGCTGAAAACGCGTTTCCGGTTCCCGACTCAGTTTTGCATGATTTTTAGCACCAAGACTCCTTGA
240002 AAAATATATAT
447 AAAATATATAT
240013 TCAA
1 TCAA
240017 CTGATTAAAT
Statistics
Matches: 407, Mismatches: 45, Indels: 18
0.87 0.10 0.04
Matches are distributed among these distances:
455 2 0.00
456 104 0.26
457 266 0.65
458 35 0.09
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.35
Consensus pattern (457 bp):
TCAATTTTTGCAAAATTTCTGCCAAAATCGTGTACTAACCATCACGGTTTGGGGCTGAAAACCCG
TTCCGGTCACAGCTCAGTTTTGCATAATTTTTAGAAACAAGACTCCTTGAAAAATATATATTCAA
CTAACCAAATCTCAGCCCTACTGGATTGAAGGAATTGTTTTTACGAGCATCAGAATTATGTTTCG
ATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCATGAAAAGCCCTTCA
AATTTTTTGGCAATAAATTATTCATTTTTTATTAGTAGTTTGTCCAAAAACTGAGGAAAAATCTT
TCAAGTCAATTATTGATAAATTTTTGCCGAAATCGTGTACTAACATCACGGTTTTTCGCTGAAAA
CGCGTTTCCGGTTCCCGACTCAGTTTTGCATGATTTTTAGCACCAAGACTCCTTGAAAAATATAT
AT
Found at i:240195 original size:330 final size:330
Alignment explanation
Indices: 239556--240347 Score: 1089
Period size: 331 Copynumber: 2.4 Consensus size: 330
239546 AAATATATAT
* * *
239556 TCAATTTT-TGCAAAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTATTGGCTGAAAACCC
1 TCAATTTTAT-CAAAATTTTTGCGAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGC
* * * * * * * *
239620 GTTCCGGGTCCCAGCTCAG-TTTGCATGATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTC
65 GTTCCGGTTCCGA-CTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTC
239684 AACTAACCAAATCTCAGCCCTACTGGATTGAAGGATTGTTTTTCTGAGCATCAGAATTATGTTTC
129 AACTAACCAAATCTCAGCCCTACTGGATTGAAGGATTGTTTTTCTGAGCATCAGAATTATGTTTC
* ** *
239749 GATTTAATTAAAAATTAATCTTGGGAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTT
194 GATTTAATTAAAAATTAATCCTGAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTT
*
239814 CAATTTTTTGGCATTGAATTATTCAATTTTTTATTAGTATTTCGTCCAAAAATTGA-GAAAAATC
259 CAATTTTTTGGCATTGAATTATTCAATTTTTTATTAGTATTTCGTCCAAAAACTGAGGAAAAATC
239878 TTTCAAG
324 TTTCAAG
*
239885 TCAATTATTAT-AAAATTTTTGCTGAAAATCGTGTACTAACCATCATGGTTTTTGGCTGAAAACG
1 TCAATT-TTATCAAAATTTTTGC-GAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACG
* *
239949 CGTTCCGGTTCCTGACTCAGTTTTGCATGTTTTTTAGCACCAAGACTCCTTGAAAAATATATATT
64 CGTTCCGGTTCC-GACTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATT
* ** * * * *
240014 CAACTGATTAAATCTCAGTCCTATTGGATTTAAGGAATTGTTTTTAC-GAGCATGAGAATTATGT
128 CAACTAACCAAATCTCAGCCCTACTGGATTGAAGG-ATTGTTTTT-CTGAGCATCAGAATTATGT
240078 TTCGATTTAATTAAAAATTAATCCT-AAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCC
191 TTCGATTTAATTAAAAATTAATCCTGAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCC
* *
240142 CTTCAAATTTTTTGGCATTGAATTTTTC-A-TTTTTATTAGTATTTTGTCCAAAAACTGAGGAAA
256 CTTC-AATTTTTTGGCATTGAATTATTCAATTTTTTATTAGTATTTCGTCCAAAAACTGAGGAAA
**
240205 AATCTTTCGGG
320 AATCTTTCAAG
* **
240216 TCAATTTTGTCTCAATTTTTGC-AGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGC
1 TCAATTTTATCAAAATTTTTGCGA-AAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGC
** * *
240280 GTTTCCGGTTCCCGGGTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAGTATTTATT
65 G-TTCCGGTT-CCGACTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATT
240345 CAA
128 CAA
240348 TTTTTCCAAA
Statistics
Matches: 410, Mismatches: 40, Indels: 24
0.86 0.08 0.05
Matches are distributed among these distances:
329 18 0.04
330 125 0.30
331 193 0.47
332 73 0.18
333 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (330 bp):
TCAATTTTATCAAAATTTTTGCGAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCG
TTCCGGTTCCGACTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCAA
CTAACCAAATCTCAGCCCTACTGGATTGAAGGATTGTTTTTCTGAGCATCAGAATTATGTTTCGA
TTTAATTAAAAATTAATCCTGAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTCA
ATTTTTTGGCATTGAATTATTCAATTTTTTATTAGTATTTCGTCCAAAAACTGAGGAAAAATCTT
TCAAG
Found at i:240275 original size:788 final size:785
Alignment explanation
Indices: 238770--241125 Score: 3597
Period size: 788 Copynumber: 3.0 Consensus size: 785
238760 ATCTTTCGGG
* *
238770 TCAATTTTTGCAAAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCG
1 TCAATTTTTGCAAAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCG
* * * * * * *
238835 TTCTGGTTCCCGGTTCAGTTTTGCATAATTTTT-GACACCAAGACTCCTTGAAAAATATATATTC
66 TTCTGGGTCCCGGCTCAGTTTTGCATAATTTTTGGA-AACAAGCCTCCTTGAGATATCTATATTC
* *
238899 AACTGACCAAATCTCAGCCCTATTGGATTTAAGGAATTGTTTTTACGAGCATTC-GAATCATGTT
130 AACTAACCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCA-TCAGAATCATGTT
* * *
238963 TCGATTTAATTAAAAATTAATCCTAAAAAAATAGGAAAACTGATATTCGAAGTGCGAAAAGCCCT
194 TCGATTTAATTAAAAATTAATCCTAAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCT
*
239028 TCAAATTTTTTGGCCTTGAATTATTCATTTTTT-TTAGTATTTTGTCCAAAAATTGAGAAAAATC
259 TC-AATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGAGAAAAATC
* **
239092 TTTCGGGTCAATTTTTGTAAAATTTCTGCCGAAATCGTGTACTAACTATCACGGTTTGGGGCTGA
323 TTTCGGGTCAATTTTTGTAAAATTTTTGCCGAAATCGTGTACTAAC-ATCA-GGTTTTTGGCTGA
* *
239157 AAACGCTTTCCGGTTACGGCTCAGTTTTGCATAATTTTTAGCACCAAGACTCCTTGAAAAATATA
386 AAACGCGTTCCGGTTCCGGCTCAGTTTTGCATAATTTTTAGCACCAAGACTCCTTGAAAAATATA
239222 TATTCAACTGATTAAATCTCAGCCCTATTGGATTTAAGGAATTGTTTTTACGAGCATGAGAATTA
451 TATTCAACTGATTAAATCTCAGCCCTATTGGATTTAAGGAATTGTTTTTACGAGCATGAGAATTA
*
239287 TGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCATGAAAAG
516 TGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAG
* * *
239352 CCCTTCAAATTTTTTGGCAATAAATTATTCATTTTTTATTAGTAGTTTGTCCAAAAACTGAGGAA
581 CCCTTCAAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAACTGAGGAA
239417 AAATCTTTCGGGTCAATTTT-TGCTCAATTTTTGCCGAAATCGTGTACTAA-CATCACGGTTTTT
646 AAATCTTTCGGGTCAATTTTGT-CTCAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTT
* *
239480 CGCTGAAAACGCGTTTCCGGTTCCCGGCTCAGTTTTGTATGATTTTTGGCACCAAGACTCCTTGA
710 GGCTGAAAACGCGTTTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGA
239545 AAAATATATAT
775 AAAATATATAT
*
239556 TCAATTTTTGCAAAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTATTGGCTGAAAACCCG
1 TCAATTTTTGCAAAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCG
* * *
239621 TTCCGGGTCCCAGCTCAG-TTTGCATGATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTCA
66 TTCTGGGTCCCGGCTCAGTTTTGCATAATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTCA
* *
239685 ACTAACCAAATCTCAGCCCTACTGGATTGAAGG-ATTGTTTTT-CTGAGCATCAGAATTATGTTT
131 ACTAACCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTAC-GAGCATCAGAATCATGTTT
* **
239748 CGATTTAATTAAAAATTAATCTTGGGAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCT
195 CGATTTAATTAAAAATTAATCCT-AAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCT
*
239813 TCAATTTTTTGGCATTGAATTATTCAATTTTTTATTAGTATTTCGTCCAAAAATTGAGAAAAATC
259 TCAATTTTTTGGCATTGAATTATTC-ATTTTTTATTAGTATTTTGTCCAAAAATTGAGAAAAATC
** * * *
239878 TTTCAAGTCAATTATTATAAAATTTTTGCTGAAAATCGTGTACTAACCATCATGGTTTTTGGCTG
323 TTTCGGGTCAATTTTTGTAAAATTTTTGCCG-AAATCGTGTACTAA-CATCA-GGTTTTTGGCTG
* **
239943 AAAACGCGTTCCGGTTCCTGACTCAGTTTTGCATGTTTTTTAGCACCAAGACTCCTTGAAAAATA
385 AAAACGCGTTCCGGTTCC-GGCTCAGTTTTGCATAATTTTTAGCACCAAGACTCCTTGAAAAATA
*
240008 TATATTCAACTGATTAAATCTCAGTCCTATTGGATTTAAGGAATTGTTTTTACGAGCATGAGAAT
449 TATATTCAACTGATTAAATCTCAGCCCTATTGGATTTAAGGAATTGTTTTTACGAGCATGAGAAT
240073 TATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAA
514 TATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAA
*
240138 AGCCCTTCAAATTTTTTGGCATTGAATTTTTCA-TTTTTATTAGTATTTTGTCCAAAAACTGAGG
579 AGCCCTTCAAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAACTGAGG
*
240202 AAAAATCTTTCGGGTCAATTTTGTCTCAATTTTTGCAGAAATCGTGTACTAACCATCACGGTTTT
644 AAAAATCTTTCGGGTCAATTTTGTCTCAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTT
*
240267 TGGCTGAAAACGCGTTTCCGGTTCCCGGGTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTG
709 TGGCTGAAAACGCGTTTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTG
* *
240332 AAAAGTATTTAT
774 AAAAATATATAT
*
240344 TCAATTTTT-CCAAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCG
1 TCAATTTTTGCAAAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCG
* *
240408 TTCTGAGTCCCCGGCTCAGTTTTGCATTATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTC
66 TTCTGGGT-CCCGGCTCAGTTTTGCATAATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTC
* *
240473 AACTAACCAAATCTCAACCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAAAATCATGTTT
130 AACTAACCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTT
* * * *
240538 AGATTTAATTAAAATTTAATCCTCAAAAAAATAGGAAAACTAATATTAGAAGCGTGACAAGCCCT
195 CGATTTAATTAAAAATTAATCCT-AAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCC-
* * *
240603 TTAAATTTTTTGGCATTGAATTATTCATTTTTTAATAGTATTTTGTCCAAAAACTGAGGAAAAAT
258 TTCAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGA-GAAAAAT
* *
240668 CTTTCGGGTCAATTTTTGCAAAATTTTTGCCGAAATCGTG--------TC-GGTTTTTGCCTGAA
322 CTTTCGGGTCAATTTTTGTAAAATTTTTGCCGAAATCGTGTACTAACATCAGGTTTTTGGCTGAA
240724 AACGCGTTCCGGTTCCCGGCTCAGTTTTGCATAATTTTT-GACACCAAGACTCCTTGAAAAATAT
387 AACGCGTTCCGGTT-CCGGCTCAGTTTTGCATAATTTTTAG-CACCAAGACTCCTTGAAAAATAT
** * * * * * *
240788 ATATTCAACTGACAAAATCTCAGCCCTAATGGAGTTAAGGAATTTTTTTTATGAGCATTAGAATC
450 ATATTCAACTGATTAAATCTCAGCCCTATTGGATTTAAGGAATTGTTTTTACGAGCATGAGAATT
* *
240853 ATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAGAACTGATATTAGAAGCGTGATAA
515 ATGTTTCGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAA
* * * * *
240918 GCCCTT-TAATTTATTGGCATTGAATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAA
580 GCCCTTCAAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAACTGAGGA
** *
240982 AAAATCTTTCGGGTCAATTTTTGT-AAAATTTTTGCCGAAATCGTGTACTAACTATCACGGTTTT
645 AAAATCTTTCGGGTCAA-TTTTGTCTCAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTT
* * * *
241046 TGGCTGAAAACGC-ATTCCGGTTCCCGGCTCAGTGTTGCATGACTTTTAGCACCAAGACTCCTTG
709 TGGCTGAAAACGCGTTTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTG
241110 AAAAATATATAT
774 AAAAATATATAT
241122 TCAA
1 TCAA
241126 CTGATCAAAT
Statistics
Matches: 1438, Mismatches: 111, Indels: 50
0.90 0.07 0.03
Matches are distributed among these distances:
778 83 0.06
779 289 0.20
780 8 0.01
781 2 0.00
783 3 0.00
784 68 0.05
785 112 0.08
786 133 0.09
787 182 0.13
788 305 0.21
789 76 0.05
790 118 0.08
791 59 0.04
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (785 bp):
TCAATTTTTGCAAAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCG
TTCTGGGTCCCGGCTCAGTTTTGCATAATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTCA
ACTAACCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTC
GATTTAATTAAAAATTAATCCTAAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTC
AATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGAGAAAAATCTTT
CGGGTCAATTTTTGTAAAATTTTTGCCGAAATCGTGTACTAACATCAGGTTTTTGGCTGAAAACG
CGTTCCGGTTCCGGCTCAGTTTTGCATAATTTTTAGCACCAAGACTCCTTGAAAAATATATATTC
AACTGATTAAATCTCAGCCCTATTGGATTTAAGGAATTGTTTTTACGAGCATGAGAATTATGTTT
CGATTTAATTAAAAATTAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTT
CAAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAACTGAGGAAAAATC
TTTCGGGTCAATTTTGTCTCAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGA
AAACGCGTTTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATA
TATAT
Found at i:240474 original size:127 final size:128
Alignment explanation
Indices: 240216--240459 Score: 361
Period size: 127 Copynumber: 1.9 Consensus size: 128
240206 ATCTTTCGGG
*
240216 TCAATTTTGTCTCAATTTTTGCAGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCG
1 TCAATTTTGTCTCAATTTTTGCAGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCG
* * * *
240281 TTTCCGGTTCCCGGGTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAGTATTTAT
66 TTTCCGGTCCCCGGCTCAGTTTTGCATGATTTTTGGAAACAAGACTCCTTGAAAAGTATTTAT
240344 TCAATTTT-TC-CAAATTTTTGCCA-AAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACC
1 TCAATTTTGTCTC-AATTTTTG-CAGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACC
* * *
240406 CG-TTCTGAGTCCCCGGCTCAGTTTTGCATTATTTTTGGAAACAAGCCTCCTTGA
64 CGTTTCCG-GTCCCCGGCTCAGTTTTGCATGATTTTTGGAAACAAGACTCCTTGA
240460 GATATCTATA
Statistics
Matches: 105, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
126 5 0.05
127 90 0.86
128 10 0.10
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (128 bp):
TCAATTTTGTCTCAATTTTTGCAGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCG
TTTCCGGTCCCCGGCTCAGTTTTGCATGATTTTTGGAAACAAGACTCCTTGAAAAGTATTTAT
Found at i:241139 original size:330 final size:327
Alignment explanation
Indices: 240355--241605 Score: 1811
Period size: 330 Copynumber: 3.8 Consensus size: 327
240345 CAATTTTTCC
* * * *
240355 AAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCGTTCTGAGTCCCC
1 AAATTTTTGCCGAAATCGTG---T-ACCATCACGGTTTTTGGCTGAAAACGCGTTCCG-GTTCCC
* * * * * * * *
240420 GGCTCAGTTTTGCATTATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTCAACTAACCAAAT
61 GGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCAACTGACCAAAT
* * *
240485 CTCAACCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAAAATCATGTTTAGATTTAATTAA
126 CTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAATTAA
* * * *
240550 AATTTAATCCTCAAAAAAATAGGAAAACTAATATTAGAAGCGTGACAAGCCCTTTAAATTTTTTG
191 AAATTAATCCTCAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTT-AATTTTTTG
* *
240615 GCATTGAATTATTCATTTTTTAATAGTATTTTGTCCAAAAACTGAGGAAAAATCTTTCGGGTCAA
255 GCATTGAATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAA
*
240680 TTTTTGCA
320 TTTTTGTA
*
240688 AAATTTTTGCCGAAATCGTG-----T--CGGTTTTTGCCTGAAAACGCGTTCCGGTTCCCGGCTC
1 AAATTTTTGCCGAAATCGTGTACCATCACGGTTTTTGGCTGAAAACGCGTTCCGGTTCCCGGCTC
* * *
240746 AGTTTTGCATAATTTTTGACACCAAGACTCCTTGAAAAATATATATTCAACTGACAAAATCTCAG
66 AGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCAACTGACCAAATCTCAG
* * * * *
240811 CCCTAATGGAGTTAAGGAATTTTTTTTATGAGCATTAGAATCATGTTTCGATTTAATTAAAAATT
131 CCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAATTAAAAATT
* * *
240876 AATCCT-AAAAAAAAAGGAGAACTGATATTAGAAGCGTGATAAGCCCTTTAATTTATTGGCATTG
196 AATCCTCAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTTAATTTTTTGGCATTG
240940 AATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAATTTTTG
261 AATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAATTTTTG
241005 TA
326 TA
*
241007 AAATTTTTGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTGAAAACGCATTCCGGTTCCCG
1 AAATTTTTGCCGAAATCGTGTAC---C-ATCACGGTTTTTGGCTGAAAACGCGTTCCGGTTCCCG
* * * *
241072 GCTCAGTGTTGCATGACTTTTAGCACCAAGACTCCTTGAAAAATATATATTCAACTGATCAAATC
62 GCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCAACTGACCAAATC
* * *
241137 TCAGGCCTATTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATTATGTTTCGATTTAATTAAA
127 TCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAATTAAA
* * * *
241202 AATTAATCCTCAAAAAAATAGGAAAACCGATATTAGAAGCATGAAAAGCCCTTCAATTTTTTGGC
192 AATTAATCCTCAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTTAATTTTTTGGC
* *
241267 ATTGAATTATTCATATTTTATTAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAATT
257 ATTGAATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAATT
241332 TTTGTA
322 TTTGTA
* *
241338 AAATTTCTGCCGAAATCGTGTACCATCACGATTTTTGGCTGAAAACGCGTTCCGGTTCCCGGCTC
1 AAATTTTTGCCGAAATCGTGTACCATCACGGTTTTTGGCTGAAAACGCGTTCCGGTTCCCGGCTC
*
241403 AGTTTTGCATGATTTTTGGCTCCAAGACTCCTTGAAAAATATATATTCAACTGACCAAATCTCAG
66 AGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCAACTGACCAAATCTCAG
* *
241468 CCCTACTGGATTTAAGGAATTGTTTTTAAGAGCATCAGAATCTTGTTTCGATTTAATT-AAAATT
131 CCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAATTAAAAATT
** * * *
241532 AATCCAGAAAAAATAA-GAAAACTGATATTAGAGGCGTGAAAAGCCCTTTACATTTTTTAGCATT
196 AATCCTCAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTTA-ATTTTTTGGCATT
241596 GAATTATTCA
260 GAATTATTCA
241606 GAATCTTGTA
Statistics
Matches: 826, Mismatches: 79, Indels: 33
0.88 0.08 0.04
Matches are distributed among these distances:
319 98 0.12
320 39 0.05
321 127 0.15
322 23 0.03
324 1 0.00
325 30 0.04
326 40 0.05
327 152 0.18
328 2 0.00
330 157 0.19
331 138 0.17
333 19 0.02
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Consensus pattern (327 bp):
AAATTTTTGCCGAAATCGTGTACCATCACGGTTTTTGGCTGAAAACGCGTTCCGGTTCCCGGCTC
AGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCAACTGACCAAATCTCAG
CCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAATTAAAAATT
AATCCTCAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTTAATTTTTTGGCATTG
AATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAATTTTTG
TA
Found at i:241605 original size:657 final size:652
Alignment explanation
Indices: 240355--241605 Score: 1900
Period size: 657 Copynumber: 1.9 Consensus size: 652
240345 CAATTTTTCC
* *
240355 AAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCGTTCTGAGTCCCC
1 AAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCATTCCGAGTCCCC
* * * * * * * *
240420 GGCTCAGTTTTGCATTATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTCAACTAACCAAAT
66 GGCTCAGTGTTGCATGACTTTTAGAAACAAGACTCCTTGAAAAATATATATTCAACTAACCAAAT
240485 CTCAACCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAAAATCATGTTTAGATTTAATTAA
131 CTCAACCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAAAATCATGTTTAGATTTAATTAA
* * * *
240550 AATTTAATCCTCAAAAAAATAGGAAAACTAATATTAGAAGCGTGACAAGCCCTTTAAATTTTTTG
196 AAATTAATCCTCAAAAAAATAGGAAAACCAATATTAGAAGCATGAAAAGCCCTTTAAATTTTTTG
* *
240615 GCATTGAATTATTCATTTTTTAATAGTATTTTGTCCAAAAACTGAGGAAAAATCTTTCGGGTCAA
261 GCATTGAATTATTCATATTTTAATAGTATTTTGTCCAAAAACTGAGAAAAAATCTTTCGGGTCAA
* *
240680 TTTTTGCAAAATTTTTGCCGAAATCGTGTCGGTTTTTGCCTGAAAACGCGTTCCGGTTCCCGGCT
326 TTTTTGCAAAATTTCTGCCGAAATCGTGTCGATTTTTGCCTGAAAACGCGTTCCGGTTCCCGGCT
240745 CAGTTTTGCATAATTTTTGACACCAAGACTCCTTGAAAAATATATATTCAACTGACAAAATCTCA
391 CAGTTTTGCATAATTTTTGACACCAAGACTCCTTGAAAAATATATATTCAACTGACAAAATCTCA
* * *
240810 GCCCTAATGGAGTTAAGGAATTTTTTTTATGAGCATTAGAATCATGTTTCGATTTAATTAAAAAT
456 GCCCTAATGGAGTTAAGGAATTGTTTTTAAGAGCATCAGAATCATGTTTCGATTTAATTAAAAAT
* * *
240875 TAATCCTAAAAAAAAAGGAGAACTGATATTAGAAGCGTGATAAGCCCTTTAATTTATTGGCATTG
521 TAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTTAATTTATTAGCATTG
240940 AATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAATTTTTG
586 AATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAATTTTTG
241005 TA
651 TA
* * * *
241007 AAATTTTTGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTGAAAACGCATTCCG-GTTCCC
1 AAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCATTCCGAGTCCCC
* * * *
241071 GGCTCAGTGTTGCATGACTTTTAGCACCAAGACTCCTTGAAAAATATATATTCAACTGATCAAAT
66 GGCTCAGTGTTGCATGACTTTTAGAAACAAGACTCCTTGAAAAATATATATTCAACTAACCAAAT
** * * * *
241136 CTCAGGCCTATTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATTATGTTTCGATTTAATTAA
131 CTCAACCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAAAATCATGTTTAGATTTAATTAA
* *
241201 AAATTAATCCTCAAAAAAATAGGAAAACCGATATTAGAAGCATGAAAAGCCC-TTCAATTTTTTG
196 AAATTAATCCTCAAAAAAATAGGAAAACCAATATTAGAAGCATGAAAAGCCCTTTAAATTTTTTG
* *
241265 GCATTGAATTATTCATATTTTATTAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAA
261 GCATTGAATTATTCATATTTTAATAGTATTTTGTCCAAAAACTGAGAAAAAATCTTTCGGGTCAA
* *
241330 TTTTTGTAAAATTTCTGCCGAAATCGTGTACCATCACGATTTTTGGCTGAAAACGCGTTCCGGTT
326 TTTTTGCAAAATTTCTGCCGAAATCGTG-----T--CGATTTTTGCCTGAAAACGCGTTCCGGTT
* * * *
241395 CCCGGCTCAGTTTTGCATGATTTTTGGCTCCAAGACTCCTTGAAAAATATATATTCAACTGACCA
384 CCCGGCTCAGTTTTGCATAATTTTTGACACCAAGACTCCTTGAAAAATATATATTCAACTGACAA
* * *
241460 AATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTAAGAGCATCAGAATCTTGTTTCGATTTAAT
449 AATCTCAGCCCTAATGGAGTTAAGGAATTGTTTTTAAGAGCATCAGAATCATGTTTCGATTTAAT
*
241525 T-AAAATTAATCC-AGAAAAAATAA-GAAAACTGATATTAGAGGCGTGAAAAGCCCTTTACATTT
514 TAAAAATTAATCCTA-AAAAAA-AAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTTA-ATTT
*
241587 TTTAGCATTGAATTATTCA
576 ATTAGCATTGAATTATTCA
241606 GAATCTTGTA
Statistics
Matches: 536, Mismatches: 53, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
650 98 0.18
651 164 0.31
652 53 0.10
655 2 0.00
656 48 0.09
657 171 0.32
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Consensus pattern (652 bp):
AAATTTTTGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACCCATTCCGAGTCCCC
GGCTCAGTGTTGCATGACTTTTAGAAACAAGACTCCTTGAAAAATATATATTCAACTAACCAAAT
CTCAACCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAAAATCATGTTTAGATTTAATTAA
AAATTAATCCTCAAAAAAATAGGAAAACCAATATTAGAAGCATGAAAAGCCCTTTAAATTTTTTG
GCATTGAATTATTCATATTTTAATAGTATTTTGTCCAAAAACTGAGAAAAAATCTTTCGGGTCAA
TTTTTGCAAAATTTCTGCCGAAATCGTGTCGATTTTTGCCTGAAAACGCGTTCCGGTTCCCGGCT
CAGTTTTGCATAATTTTTGACACCAAGACTCCTTGAAAAATATATATTCAACTGACAAAATCTCA
GCCCTAATGGAGTTAAGGAATTGTTTTTAAGAGCATCAGAATCATGTTTCGATTTAATTAAAAAT
TAATCCTAAAAAAAAAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTTAATTTATTAGCATTG
AATTATTCATTTTTTAATAGTATTTTGTCCAAAAATTGAGAAAAAATCTTTCGGGTCAATTTTTG
TA
Found at i:241704 original size:102 final size:101
Alignment explanation
Indices: 241502--241691 Score: 224
Period size: 102 Copynumber: 1.9 Consensus size: 101
241492 TTTAAGAGCA
* * ** *
241502 TCAGAATCTTGTTTCGATTTAATTAAAATTAATCCAGAAAAAATAAGAAAACTGATATTAGAGGC
1 TCAGAATCTTGTATCGATTTAATTAAAATTAATCCAGAAAAAATAAGAAAACTAATAACAGAAGC
* *
241567 GTGAAAAGCCCTTTACATTTTTTAGCATTGAATTAT
66 GTGAAAAGCCCTTCACATTTTTGAGCATTGAATTAT
** *
241603 TCAGAATCTTGTATCGATTTAATTATAAATTAATTTAGAAAAAATAGGAAAAAC-AATAACAGAA
1 TCAGAATCTTGTATCGATTTAATTA-AAATTAATCCAGAAAAAATAAG-AAAACTAATAACAGAA
*
241667 GTGTGTAAAA-CCCTTCA-ATCTTTTG
64 GCGTG-AAAAGCCCTTCACAT-TTTTG
241692 GGCGTTATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
101 26 0.35
102 39 0.53
103 9 0.12
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.34
Consensus pattern (101 bp):
TCAGAATCTTGTATCGATTTAATTAAAATTAATCCAGAAAAAATAAGAAAACTAATAACAGAAGC
GTGAAAAGCCCTTCACATTTTTGAGCATTGAATTAT
Found at i:242624 original size:444 final size:444
Alignment explanation
Indices: 241795--242648 Score: 1467
Period size: 444 Copynumber: 1.9 Consensus size: 444
241785 ATACTAACCA
*
241795 TCACGGTTTTTGACTGAAAACGCAATTCTGGGTCCCGGCTCAGTTTTGCATTATTTTGGGCACCA
1 TCACGGTTTTTGACTGAAAACGCAATTCCGGGTCCCGGCTCAGTTTTGCATTATTTTGGGCACCA
* * * *
241860 AGACTCCTTGAAAGATATATATTCAATTTTTGCAAAATTTTTGCCGAAATAGTGTACTAACCATC
66 AGACTCCTTGAAAAATATATATTCAATTCTTGCAAAATTTTTGCCAAAATAGTGTACTAACCAAC
*
241925 ACGGTTGTTGGCGGAAAACCCGTTCCGGGTCCCGGCTCAGTTTTGCATGATTTTTGGAAACAAGC
131 ACGGTTGTTGGCGGAAAACCCGTTCCGGGTCCCAGCTCAGTTTTGCATGATTTTTGGAAACAAGC
241990 CTCCTTGAGATATCTATATTCAACTAACCAAATCTCAGCCCTACTGGATTTAAAGAATTGTTTTT
196 CTCCTTGAGATATCTATATTCAACTAACCAAATCTCAGCCCTACTGGATTTAAAGAATTGTTTTT
242055 ACGAGCATCAGAATCATGTTTCGATTTAATTAAAAATTAATCCTCAAAAAAATAGGAAAACTAAT
261 ACGAGCATCAGAATCATGTTTCGATTTAATTAAAAATTAATCCTCAAAAAAATAGGAAAACTAAT
* *
242120 ATTAGAAGCGTGACAAGCCCTTTAAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTT
326 ATTAGAAGCGTGAAAAGCCCTTCAAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTT
*
242185 GTCCAAAAACTGAGGAAAAATCATTCGGGTCAGTTTTTGCCGAAATTGTGTACG
391 GTCCAAAAACTGAGAAAAAATCATTCGGGTCAGTTTTTGCCGAAATTGTGTACG
* ** * * *
242239 TCACGGTTTTTGGCTGAAAACGCGTTTCCGGTTCCCGGCTTAGTTTTGC-TTGATTTTTGGCACC
1 TCACGGTTTTTGACTGAAAACGCAATTCCGGGTCCCGGCTCAGTTTTGCATT-ATTTTGGGCACC
*
242303 AAGACTCCTTGAAAAATATATATTCAATTCTTGCAAAATTTTTGCCAAAATCGTGTACTAACCAA
65 AAGACTCCTTGAAAAATATATATTCAATTCTTGCAAAATTTTTGCCAAAATAGTGTACTAACCAA
* *
242368 CACGGTTTTTGGCTGAAAACCCGTTCCGGGTCCCAGCTCAGTTTTGCATGATTTTTGGAAACAAG
130 CACGGTTGTTGGCGGAAAACCCGTTCCGGGTCCCAGCTCAGTTTTGCATGATTTTTGGAAACAAG
* *
242433 CCTCCTTGAGATATCTATATTCAACTAACCAAATGTCAGCCCTACTGGATTTAAGGAATTGTTTT
195 CCTCCTTGAGATATCTATATTCAACTAACCAAATCTCAGCCCTACTGGATTTAAAGAATTGTTTT
* * *
242498 TACGAGCATTAGAATCATGTTTCGATTTAATTAAAAATTAATCCTCGAAAAAATAGGAAAACTGA
260 TACGAGCATCAGAATCATGTTTCGATTTAATTAAAAATTAATCCTCAAAAAAATAGGAAAACTAA
*
242563 TATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTT
325 TATTAGAAGCGTGAAAAGCCCTTCAAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTT
*
242628 TGTCCAAAAATTGAGAAAAAA
390 TGTCCAAAAACTGAGAAAAAA
242649 ATCTTTCAAG
Statistics
Matches: 384, Mismatches: 25, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
443 2 0.01
444 382 0.99
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (444 bp):
TCACGGTTTTTGACTGAAAACGCAATTCCGGGTCCCGGCTCAGTTTTGCATTATTTTGGGCACCA
AGACTCCTTGAAAAATATATATTCAATTCTTGCAAAATTTTTGCCAAAATAGTGTACTAACCAAC
ACGGTTGTTGGCGGAAAACCCGTTCCGGGTCCCAGCTCAGTTTTGCATGATTTTTGGAAACAAGC
CTCCTTGAGATATCTATATTCAACTAACCAAATCTCAGCCCTACTGGATTTAAAGAATTGTTTTT
ACGAGCATCAGAATCATGTTTCGATTTAATTAAAAATTAATCCTCAAAAAAATAGGAAAACTAAT
ATTAGAAGCGTGAAAAGCCCTTCAAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTT
GTCCAAAAACTGAGAAAAAATCATTCGGGTCAGTTTTTGCCGAAATTGTGTACG
Found at i:243169 original size:331 final size:330
Alignment explanation
Indices: 242326--243358 Score: 1597
Period size: 331 Copynumber: 3.1 Consensus size: 330
242316 AAATATATAT
* * * * *
242326 TCAATTCTTGCAAAATTTTTGCCAAAATCGTGTACTAACCAACACGGTTTTTGGCTGAAAACCCG
1 TCAATTTTTGTAAAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCG
* * * * * *
242391 TTCCGGGTCCCAGCTCAGTTTTGCATGATTTTTGGAAACAAGCCTCCTTGAGATATCTATATTCA
66 TTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAGATATATATATTCA
* * *
242456 ACTAACCAAATGTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATTAGAATCATGTTTC
131 ACTAATCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTC
242521 GATTTAATTAAAAATTAATCCTCGAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTT
196 GATTTAATTAAAAATTAATCCT-GAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTT
242586 CAATTTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGAGAAAAAAAT
260 CAA-TTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGAG-AAAAAAT
*
242651 CTTTCAAG
323 CTTTCGAG
* * *
242659 TCAATATTTATAAAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCG
1 TCAATTTTTGTAAAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCG
* * * *
242724 TTCTGGTTCCCGGCTCA---ATGCATGATTTTTAGCACCAGGACTCCTTGAGATATATATATTCA
66 TTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAGATATATATATTCA
242786 ACTAATCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTC
131 ACTAATCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTC
*
242851 GATTTAATTAAAAATTAATCCTGGAGAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTT
196 GATTTAATTAAAAATTAATCCT-GAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTT
242916 CAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGAGAAAAAATCT
260 CAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGAGAAAAAATCT
*
242981 TTCGGG
325 TTCGAG
* *
242987 TCAATTTTTGTAAAATTTCTGCCGAAATCGTGCACTAACCATCACGGTTTTTGGCTGAAAACGCG
1 TCAATTTTTGTAAAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCG
* *
243052 TTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAAAAATATATATTCA
66 TTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAGATATATATATTCA
* * * *
243117 ACTGATCAAATCTCAGCCCTATTGGATTTAAGGAATGGTTTTTACGAGCATCAGAATTATGTTTC
131 ACTAATCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTC
* * * * *
243182 GATTTAATTAAAAAATAATCCTAAAAAAAAAGGAGAACTGATATTAGAAGCGTGAAAAGTCCTTC
196 GATTTAATTAAAAATTAATCCTGAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTC
* * *
243247 AAATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAATACTGAGGAAAAATCT
261 -AATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGAGAAAAAATCT
*
243312 TTCGTG
325 TTCGAG
* *
243318 TCAATTTTATCT-CAATTTTTGCCGAAATCGTGTACTAACCA
1 TCAATTTT-TGTAAAATTTTTGCCGAAATCGTGTACTAACCA
243359 CATAATCTTA
Statistics
Matches: 641, Mismatches: 54, Indels: 12
0.91 0.08 0.02
Matches are distributed among these distances:
328 89 0.14
329 53 0.08
330 204 0.32
331 222 0.35
332 2 0.00
333 71 0.11
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (330 bp):
TCAATTTTTGTAAAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCG
TTCCGGTTCCCGGCTCAGTTTTGCATGATTTTTGGCACCAAGACTCCTTGAGATATATATATTCA
ACTAATCAAATCTCAGCCCTACTGGATTTAAGGAATTGTTTTTACGAGCATCAGAATCATGTTTC
GATTTAATTAAAAATTAATCCTGAAAAAATAGGAAAACTGATATTAGAAGCGTGAAAAGCCCTTC
AATTTTTTGGCATTGAATTATTCATTTTTTATTAGTATTTTGTCCAAAAATTGAGAAAAAATCTT
TCGAG
Done.