Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009491.1 Corchorus capsularis cultivar CVL-1 contig09512, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23803

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3404
331
10.3
330
84
3
3980
32
16
15
35
1.90
7117--7154
6
6.2
6
87
6
58
34
13
0
52
1.40
7248--7372
65
1.9
65
83
3
162
33
8
16
40
1.80
7248--7372
22
5.8
22
71
10
80
33
8
16
40
1.80
11697--11739
2
21.5
2
81
9
52
46
6
0
46
1.30
15960--15984
6
4.2
6
100
0
50
16
20
32
32
1.94
16559--16606
13
3.5
13
75
13
51
29
0
12
58
1.35
16679--16792
37
3.1
37
82
5
149
31
12
7
48
1.69
20440--20488
18
2.7
18
93
0
80
26
24
4
44
1.71
21123--21286
60
2.7
60
99
0
319
56
19
3
20
1.55
21858--21887
13
2.3
13
94
0
51
10
6
3
80
1.01
22800--22882
42
2.0
42
86
9
116
26
4
34
33
1.78
22966--23021
29
2.0
28
92
3
94
32
10
19
37
1.86
23007--23205
66
3.0
66
76
7
224
28
8
21
42
1.81
23282--23397
44
2.6
42
82
10
117
35
12
8
43
1.74

Tables:   1

The End!