Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009498.1 Corchorus capsularis cultivar CVL-1 contig09519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37777

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
386--425
20
2.0
20
90
5
62
62
10
2
25
1.39
428--571
73
2.0
74
88
1
218
38
8
30
22
1.83
5349--5375
3
9.0
3
100
0
54
0
33
0
66
0.92
8590--8619
10
3.0
10
90
0
51
26
10
13
50
1.73
21076--21213
22
6.3
21
70
15
84
40
13
10
35
1.79
21076--21184
43
2.5
44
78
11
125
42
12
11
33
1.79
21026--21217
22
8.8
22
66
17
69
39
13
11
36
1.80
21233--21280
22
2.2
22
88
7
71
39
20
4
35
1.72
21637--21827
22
8.5
23
71
15
87
38
14
8
38
1.77
21624--21761
44
3.1
44
81
3
132
37
14
7
39
1.75
21889--22216
22
14.9
22
73
13
196
36
17
9
37
1.82
21889--22216
44
7.5
44
73
10
244
36
17
9
37
1.82
21898--22215
66
4.8
66
73
11
267
36
16
9
37
1.82
22622--22708
33
2.6
34
82
5
90
12
40
35
11
1.79
24415--24450
2
19.0
2
88
11
58
47
0
0
52
1.00
26988--27015
2
14.0
2
100
0
56
50
0
0
50
1.00
35163--35190
3
9.3
3
100
0
56
35
0
0
64
0.94
35698--35730
2
16.5
2
87
12
50
45
3
0
51
1.16
35697--35737
12
3.5
11
84
12
55
41
4
0
53
1.22
37426--37450
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!