genome.fa.s9502.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009502.1 Corchorus capsularis cultivar CVL-1 contig09523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35118

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471--509	20	2.0	20	89	0	60	33	15	15	35	1.89
564--750	50	3.7	50	78	6	207	42	4	16	35	1.70
512--700	51	3.7	51	77	5	195	42	3	19	34	1.69
495--751	101	2.5	100	88	4	372	42	5	17	35	1.71
495--801	101	3.0	101	84	2	303	41	5	16	36	1.72
1400--1606	47	4.4	47	90	1	310	47	8	20	23	1.77
1400--1606	94	2.2	94	93	2	346	47	8	20	23	1.77
1638--1703	31	2.1	31	86	8	89	51	6	15	27	1.66
1821--1869	21	2.3	22	82	10	66	61	2	20	16	1.44
1860--1945	35	2.5	35	84	0	109	50	9	20	19	1.75
1929--2016	21	4.1	21	72	7	70	50	7	21	20	1.74
1997--2052	15	3.9	15	74	9	62	57	5	21	16	1.59
2028--2107	22	3.7	21	80	14	92	57	6	16	20	1.60
9992--10036	19	2.3	20	92	3	74	26	0	0	73	0.84
9992--10038	18	2.6	19	87	12	73	25	0	0	74	0.82
9988--10038	26	1.9	26	84	4	66	27	0	0	72	0.85
15696--15838	62	2.3	62	100	0	286	36	23	11	29	1.89
15820--15993	30	5.7	30	92	1	258	33	18	18	29	1.95
15820--15993	92	1.9	90	88	2	242	33	18	18	29	1.95
17968--18031	33	1.9	33	83	0	83	31	25	20	23	1.98
22532--22587	28	2.0	28	96	0	103	42	19	14	23	1.88
22822--22940	61	2.0	57	88	9	177	31	17	3	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23337--23374	12	3.2	12	82	14	51	50	0	5	44	1.24
23798--23856	32	1.9	31	83	16	79	37	20	8	33	1.83
26847--26929	2	41.5	2	100	0	166	50	49	0	0	1.00
28594--28903	155	2.0	155	100	0	620	49	17	12	20	1.79
31613--31648	18	1.9	19	88	5	56	41	0	5	52	1.24
32723--32754	6	5.5	6	96	3	57	71	15	0	12	1.14

Tables:   1

The End!