Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009507.1 Corchorus capsularis cultivar CVL-1 contig09528, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42464

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
586--611
2
13.0
2
100
0
52
50
0
0
50
1.00
1966--2015
2
25.5
2
76
11
50
42
2
0
56
1.11
2331--2397
24
2.7
26
86
4
93
38
22
8
29
1.85
7229--7468
113
2.1
115
85
3
324
33
20
18
27
1.96
10821--10845
2
12.5
2
100
0
50
48
0
0
52
1.00
10927--10954
4
7.0
4
100
0
56
75
0
0
25
0.81
11133--11184
17
3.1
17
83
10
79
53
9
0
36
1.34
15140--15769
22
28.9
21
67
15
207
37
9
16
35
1.82
15595--15658
21
2.8
24
86
11
89
43
9
12
34
1.75
15914--15993
22
3.7
21
81
9
74
38
11
10
40
1.75
16059--16166
22
4.8
22
83
5
110
37
7
19
36
1.80
16076--16139
23
2.8
23
92
4
103
35
4
23
35
1.76
20816--20854
3
13.0
3
100
0
78
33
0
0
66
0.92
20853--20878
3
8.7
3
100
0
52
34
30
0
34
1.58
21321--21483
22
7.7
21
73
13
86
34
15
8
41
1.78
21321--21444
44
2.9
41
77
11
113
38
12
8
40
1.73
21433--21483
19
2.6
20
90
6
86
25
17
11
45
1.83
21701--21796
21
4.4
22
75
17
76
32
16
9
41
1.80
21564--21796
22
10.6
22
68
14
81
34
15
8
41
1.78
21837--21959
22
5.5
22
71
9
79
38
17
7
36
1.78
21834--22145
44
7.2
44
65
20
100
37
16
9
35
1.82
21995--22088
22
4.2
22
76
8
73
41
19
9
29
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22072--22145
22
3.4
22
73
17
73
36
13
12
37
1.82
22063--22177
44
2.6
44
82
5
126
38
17
8
35
1.81
22350--22387
19
2.0
20
85
15
53
63
2
5
28
1.30
22469--22528
26
2.3
27
82
5
70
53
0
5
41
1.23
22556--22615
31
1.9
31
93
0
102
48
5
18
28
1.69
23779--23840
30
2.1
30
100
0
124
14
19
6
59
1.56
25385--25415
11
2.7
11
95
5
53
25
19
35
19
1.95
28423--28452
15
2.0
15
93
0
51
46
3
13
36
1.60
28670--28740
21
3.2
22
86
6
99
40
9
2
46
1.52
39257--40564
438
3.0
434
83
4
1513
27
12
17
42
1.85
40995--41093
30
3.4
29
84
8
130
34
5
18
42
1.72
41304--41408
52
2.0
52
85
3
140
20
20
26
32
1.97

Tables:   1

The End!