Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009508.1 Corchorus capsularis cultivar CVL-1 contig09529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97009

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3004--3038
15
2.3
15
95
0
61
22
5
42
28
1.76
4657--4703
18
2.6
18
79
0
58
25
27
12
34
1.92
5352--5386
17
2.1
17
94
0
61
40
14
0
45
1.45
6239--6281
15
2.7
15
89
10
59
60
2
0
37
1.10
7776--7832
2
30.5
2
73
19
52
42
1
3
52
1.28
8110--8303
44
4.3
44
73
5
154
38
9
11
40
1.75
8243--8346
23
4.6
23
76
8
99
33
11
9
45
1.73
8242--8353
45
2.5
44
77
13
129
33
12
8
44
1.73
8110--8349
22
10.6
22
71
9
135
37
10
11
40
1.76
8398--8475
22
3.5
22
82
6
79
39
11
6
42
1.67
8511--8611
22
4.6
22
74
6
71
39
11
4
43
1.63
8629--8670
22
1.9
22
95
0
75
45
14
4
35
1.66
8637--8732
44
2.2
43
80
9
106
36
13
8
41
1.75
9436--9539
16
6.5
16
77
12
115
31
37
22
8
1.84
9436--9539
32
3.2
32
87
2
138
31
37
22
8
1.84
10607--10655
9
5.9
9
73
26
54
34
34
24
6
1.80
10600--10678
16
4.9
16
75
6
70
34
36
21
7
1.82
10585--10678
32
2.9
32
80
12
104
32
37
22
7
1.82
10648--10691
23
1.9
23
85
0
61
36
34
15
13
1.87
10671--10724
16
3.4
16
75
14
58
37
35
18
9
1.83
24586--24620
13
2.7
13
86
0
52
25
11
45
17
1.81
28006--28046
20
2.0
20
95
0
73
48
21
0
29
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29809--29873
31
2.1
31
97
0
121
41
21
15
21
1.90
65594--65638
23
2.0
23
95
4
83
40
22
24
13
1.90
66707--66766
30
2.0
31
83
3
77
31
13
18
36
1.89
69341--69373
16
2.1
16
100
0
66
51
18
0
30
1.46
70191--70221
11
2.8
11
95
0
53
0
3
19
77
0.90
70180--70221
17
2.5
17
84
11
59
0
4
16
78
0.91
70179--70221
6
7.3
6
82
12
54
0
4
16
79
0.90
83099--83136
5
7.4
5
90
3
58
0
5
39
55
1.23
83498--83559
31
2.0
31
100
0
124
22
22
16
38
1.92
86282--86324
6
7.2
6
89
0
50
23
65
2
9
1.34
86276--86315
3
13.3
3
83
0
53
27
65
2
5
1.27
86275--86315
12
3.4
12
89
0
64
26
63
2
7
1.33
94182--94247
31
2.2
31
89
5
100
33
10
25
30
1.90
94194--94253
31
2.0
30
96
3
111
33
10
23
33
1.88
94694--94771
29
2.7
29
84
9
104
20
23
14
42
1.88
96026--96320
109
2.7
109
89
5
441
36
11
1
50
1.48

Tables:   1

The End!