Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009511.1 Corchorus capsularis cultivar CVL-1 contig09532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148810

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9130--9292
60
2.7
60
87
3
222
34
17
19
28
1.94
9190--9321
31
4.3
31
77
11
146
37
17
20
25
1.94
9351--9456
31
3.5
31
70
14
103
24
20
20
33
1.97
9352--9514
60
2.7
60
85
0
218
26
19
19
34
1.95
12953--12977
1
25.0
1
100
0
50
0
0
0
100
0.00
28351--28386
18
2.1
18
94
5
65
41
25
16
16
1.89
36226--36296
29
2.4
30
79
11
83
52
9
14
23
1.71
44406--44777
107
3.5
107
91
2
554
41
8
8
41
1.65
53397--53437
22
2.0
21
85
9
57
58
17
12
12
1.63
56482--56551
33
2.1
34
86
5
97
62
7
12
17
1.51
56482--56552
35
2.1
34
84
7
90
63
7
12
16
1.50
57762--57787
11
2.4
11
100
0
52
15
0
0
84
0.62
59690--59824
67
2.0
67
100
0
270
19
13
25
42
1.87
63306--63413
52
2.1
51
96
1
198
33
21
16
28
1.95
69770--69857
40
2.2
41
85
6
117
29
17
7
45
1.76
70738--70771
1
34.0
1
100
0
68
0
0
0
100
0.00
73378--73409
1
32.0
1
93
0
55
3
0
0
96
0.20
89167--89191
2
12.5
2
100
0
50
52
0
0
48
1.00
91617--91647
13
2.4
13
94
0
53
0
22
0
77
0.77
102506--102559
26
2.1
26
96
0
99
31
7
16
44
1.75
114909--114953
9
5.0
9
83
0
54
37
26
2
33
1.69
115935--116022
45
2.0
45
84
4
115
13
19
7
59
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117822--117901
29
2.8
29
98
0
151
33
27
13
25
1.93
122110--122140
9
3.4
9
95
0
53
25
25
29
19
1.99
128894--128938
21
2.0
22
87
8
65
48
33
0
17
1.48
135159--135345
15
11.9
15
72
10
133
21
31
27
19
1.97
135181--135267
32
2.7
33
82
7
106
20
33
24
21
1.97
135211--135330
48
2.5
48
89
1
170
20
30
27
20
1.98
135163--135310
80
1.9
80
89
0
233
22
31
26
19
1.98
135243--135375
63
2.1
63
84
2
178
23
30
26
19
1.98
135322--135385
33
1.9
33
87
6
94
26
32
18
21
1.97
135243--135375
15
8.5
15
69
17
65
23
30
26
19
1.98
135657--135711
12
4.5
12
84
4
65
34
14
21
29
1.93
135657--135711
25
2.2
24
84
9
67
34
14
21
29
1.93
136791--136820
3
10.3
3
92
7
53
33
36
0
30
1.58
137281--137319
12
3.6
12
74
25
50
30
15
28
25
1.96
137547--137635
46
1.9
46
83
0
115
12
35
28
23
1.91
138025--138082
16
3.7
16
88
2
82
32
27
15
24
1.95
141605--142170
49
11.5
49
83
5
608
23
30
14
31
1.94
141611--142170
198
2.9
196
82
4
630
23
30
14
31
1.94
142018--142281
97
2.7
97
80
6
268
23
31
15
29
1.95
141611--142338
49
14.9
49
78
7
379
23
30
15
30
1.95

Tables:   1

The End!