Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009516.1 Corchorus capsularis cultivar CVL-1 contig09537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90841

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10455--10479
11
2.3
11
100
0
50
36
8
8
48
1.62
17023--17067
5
8.8
5
92
7
65
55
0
0
44
0.99
17023--17068
2
25.5
2
79
20
57
54
0
0
45
0.99
40201--40266
29
2.3
30
86
5
91
33
13
19
33
1.91
40340--40486
59
2.5
60
81
7
158
33
17
14
34
1.90
42284--42342
24
2.5
23
84
13
75
57
3
38
0
1.15
52360--52433
37
2.1
33
80
14
78
25
20
17
36
1.94
58231--58331
51
2.0
51
88
3
150
34
8
21
34
1.85
63835--63888
6
8.8
6
93
2
90
81
0
16
1
0.78
83802--83826
13
1.9
13
100
0
50
0
24
4
72
1.02
83912--84006
47
2.0
48
93
2
165
23
16
16
43
1.88
87529--87601
27
2.7
27
89
0
110
35
20
23
20
1.96
88112--88262
75
2.0
75
100
0
302
31
23
18
26
1.97
88820--88859
20
2.0
21
85
5
55
17
20
20
42
1.89

Tables:   1

The End!