Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009517.1 Corchorus capsularis cultivar CVL-1 contig09538, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82241

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1170--1477
167
1.8
167
89
1
483
42
18
14
23
1.88
3547--3571
3
8.3
3
100
0
50
36
0
0
64
0.94
4408--4435
4
7.0
4
100
0
56
50
25
25
0
1.50
6718--6754
18
2.1
18
89
0
56
51
16
16
16
1.77
11013--11059
18
2.6
18
79
0
58
8
14
44
31
1.76
13925--13986
31
2.0
31
83
0
79
46
6
17
29
1.73
15157--15307
39
3.9
39
89
3
216
24
19
32
23
1.97
15157--15307
79
1.9
77
87
2
221
24
19
32
23
1.97
15337--15374
6
6.3
6
93
0
67
18
0
31
50
1.47
17567--17819
123
2.1
123
82
1
301
34
10
15
38
1.83
18078--18142
32
2.0
33
93
3
114
21
20
20
38
1.94
19296--19329
5
6.6
5
89
3
50
14
2
0
82
0.79
30100--30156
29
2.0
27
90
6
87
22
7
10
59
1.54
31709--31882
87
2.0
87
100
0
348
25
21
20
32
1.98
42160--42237
29
2.7
28
75
15
86
14
14
30
41
1.85
46215--46266
5
10.2
5
85
4
59
11
0
7
80
0.89
46215--46266
10
5.1
10
88
4
68
11
0
7
80
0.89
46215--46266
15
3.4
15
81
5
68
11
0
7
80
0.89
46217--46276
10
6.2
10
76
3
52
8
0
8
83
0.82
46215--46277
15
4.1
15
75
15
58
11
0
7
80
0.89
48156--48195
21
1.9
21
89
0
62
55
2
0
42
1.13
48261--48313
21
2.6
20
80
11
63
39
5
7
47
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78848--78885
2
19.5
2
94
5
69
50
0
0
50
1.00
79640--79670
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!