Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009519.1 Corchorus capsularis cultivar CVL-1 contig09540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95856

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--762
334
2.3
334
92
1
1276
36
15
15
32
1.88
763--3809
334
9.1
333
87
2
4345
36
15
15
32
1.89
763--3809
668
4.6
668
91
2
4908
36
15
15
32
1.89
26681--26741
27
2.2
27
97
2
113
6
32
6
54
1.52
38989--39839
213
4.0
213
94
0
1414
30
23
21
23
1.99
50349--50374
10
2.6
10
100
0
52
84
0
0
15
0.62
58368--58510
31
4.5
31
75
11
128
19
24
25
30
1.98
60739--60802
3
21.3
3
93
6
112
65
0
0
34
0.93
68623--70189
827
1.9
830
91
2
2576
39
9
22
29
1.85
76991--77029
2
20.0
2
94
5
71
48
0
0
51
1.00
78941--78995
14
4.2
13
75
11
51
3
7
9
80
1.02
78925--78994
35
1.9
37
88
8
108
4
7
12
75
1.15
78948--79009
28
2.2
29
91
8
110
4
9
12
72
1.25
78957--79007
14
3.6
14
89
0
84
5
7
15
70
1.30
85907--86015
54
2.0
54
90
0
173
33
13
32
20
1.92
86532--86578
22
2.1
22
96
0
85
38
17
17
27
1.91
89977--90432
228
2.0
223
82
9
557
29
16
21
32
1.95
94272--94299
2
14.0
2
100
0
56
50
0
0
50
1.00
95016--95046
1
31.0
1
100
0
62
100
0
0
0
0.00

Tables:   1

The End!