Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009520.1 Corchorus capsularis cultivar CVL-1 contig09541, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37353

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6401--6439
20
1.9
20
89
5
60
58
7
2
30
1.39
6446--6602
74
2.1
74
91
2
253
40
7
29
22
1.82
12460--12496
4
9.2
4
100
0
74
24
0
48
27
1.51
13340--13544
102
2.0
102
99
0
401
43
22
11
22
1.84
14113--14152
20
2.0
20
100
0
80
25
15
30
30
1.95
19213--19288
30
2.6
29
85
10
93
18
19
1
60
1.43
20828--20878
24
2.1
24
92
0
84
17
23
13
45
1.84
22247--22287
22
2.0
20
85
9
55
12
26
17
43
1.84
29887--29957
35
2.0
35
97
0
133
32
11
28
28
1.91
30049--30235
22
8.5
23
70
13
74
32
18
13
35
1.90
30065--30184
44
2.7
43
78
7
125
31
20
14
34
1.92
30121--30303
66
2.8
66
79
7
194
33
20
13
32
1.91
30158--30314
44
3.7
43
72
12
103
34
17
13
35
1.88
30116--30292
22
8.0
22
72
16
118
33
20
12
32
1.91
32808--32835
2
14.0
2
100
0
56
50
0
0
50
1.00
33849--33887
17
2.3
17
86
0
51
23
17
0
58
1.38
34117--37351
333
9.8
332
88
2
4276
30
14
17
37
1.90
34117--37351
1000
3.3
997
87
3
4480
30
14
17
37
1.90

Tables:   1

The End!