Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009521.1 Corchorus capsularis cultivar CVL-1 contig09542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68016

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
317--814
247
2.0
248
82
4
603
32
16
16
34
1.92
5--1149
581
2.0
581
85
3
1556
30
16
17
35
1.92
564--4290
333
11.1
333
79
7
3662
32
14
16
36
1.89
3377--4290
336
2.8
320
81
5
962
32
13
15
37
1.87
6872--7039
83
2.0
83
98
0
327
42
15
7
34
1.74
7706--7762
16
3.7
15
79
6
60
26
15
24
33
1.95
7676--7820
73
2.0
72
91
4
238
22
12
31
33
1.91
7722--7833
57
1.9
58
89
5
174
22
9
32
35
1.87
7779--7820
15
2.7
15
92
3
66
23
14
28
33
1.94
9877--9953
31
2.5
30
85
4
100
36
19
7
36
1.81
9899--9983
31
2.8
31
77
10
77
41
20
5
32
1.76
11147--11198
12
4.2
13
73
16
56
19
0
15
65
1.27
11244--11272
2
14.5
2
100
0
58
51
0
0
48
1.00
22832--22879
10
4.7
10
82
5
60
83
12
2
2
0.83
22830--22882
13
4.1
13
75
0
52
83
13
1
1
0.82
22847--22894
16
3.2
16
71
17
57
77
14
4
4
1.08
22833--22894
10
6.3
9
75
20
54
80
12
3
3
0.95
25772--25836
27
2.4
27
94
2
112
58
7
27
6
1.50
30198--30243
24
2.0
23
83
12
58
2
19
26
52
1.58
40081--40317
119
2.0
120
86
2
334
23
30
24
21
1.99
40317--40438
26
4.7
26
76
11
124
28
38
15
17
1.90
40317--40438
53
2.3
52
90
6
185
28
38
15
17
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43195--43250
27
2.1
27
100
0
112
10
25
7
57
1.58
46078--46120
17
2.6
16
85
10
59
20
23
20
34
1.96
46743--46827
23
3.8
22
78
9
91
41
11
4
42
1.62
46704--46928
22
10.4
22
72
11
121
35
14
8
41
1.75
46564--46974
44
9.4
44
71
12
152
37
14
9
38
1.78
46965--47031
19
3.5
19
85
2
89
28
20
10
40
1.86
47137--47327
22
8.6
22
72
13
124
34
12
10
42
1.77
47201--47477
22
12.4
22
67
18
94
35
14
10
38
1.81
47548--47657
46
2.5
43
82
5
112
37
16
11
34
1.85
47595--47657
22
2.9
22
92
0
108
33
15
14
36
1.88
47593--47670
22
3.6
21
81
11
95
30
17
14
37
1.90
49825--49849
8
3.1
8
100
0
50
0
12
0
88
0.53
53936--53968
2
16.5
2
100
0
66
48
0
0
51
1.00
55136--55170
7
5.0
7
100
0
70
28
14
42
14
1.84
55408--55453
5
9.2
5
100
0
92
0
19
0
80
0.71
57176--57224
25
2.0
25
100
0
98
22
20
16
40
1.91
66311--66346
17
2.2
16
90
5
54
44
25
16
13
1.85

Tables:   1

The End!