Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009530.1 Corchorus capsularis cultivar CVL-1 contig09551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37894
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Found at i:444 original size:23 final size:23
Alignment explanation
Indices: 418--467 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
408 CAATCAAATC
418 ATCATGCATGCTCAAAGAATCTT
1 ATCATGCATGCTCAAAGAATCTT
441 ATCATGCATGCTCAAAGAATCTT
1 ATCATGCATGCTCAAAGAATCTT
464 ATCA
1 ATCA
468 GGTGGTTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (23 bp):
ATCATGCATGCTCAAAGAATCTT
Found at i:12513 original size:2 final size:2
Alignment explanation
Indices: 12506--12532 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
12496 CAGTAAAAGA
12506 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
12533 ATTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26469 original size:12 final size:12
Alignment explanation
Indices: 26449--26480 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26439 TTGTCAAACT
26449 GAAAAAAAGAAA
1 GAAAAAAAGAAA
*
26461 GAAAGAAAGAAA
1 GAAAAAAAGAAA
26473 GAAAAAAA
1 GAAAAAAA
26481 ACTGGATCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
GAAAAAAAGAAA
Found at i:30333 original size:435 final size:430
Alignment explanation
Indices: 29499--30368 Score: 1436
Period size: 435 Copynumber: 2.0 Consensus size: 430
29489 AATGCAGCCA
*
29499 TGAGCCATCTGATGACTTGCAATTACCAAAGTCTGCTGGTGAGTATGTTTTACTATCTGGATGCC
1 TGAGCCATCTGATGACTTGCAATTACCAAAGTCTGCTGGTGAGTATGTTTTACTATCTGAATGCC
*
29564 TGCTTTAGTGGCCTATAAATGGGGACTACGTTTATCCTTTTTGTTTGCCCTCTTATTGTTGTATC
66 TGCTTTAGTGGCCTATAAATGGGGACTACATTTATCCTTTTTGTTTGCCCTCTTATTGTTGTATC
* *
29629 TGCTCCCCTTTTCAACTTGCTAATGTTTTATACCTTACGCTACAAACATCAAGTTAAACTTTATC
131 TGCTCCCCTTTCCAACTTGCTAATGTTATATACCTTACGCTACAAACATCAAGTTAAACTTTATC
29694 CTTAACTATGCTTACATAGGAAGCTGATCCGCAAGTAGTTTTGAAACAGAGCAATCAAAGGTGCT
196 CTTAACTATGCTTACATAGGAAGCTGATCCGCAAGTAGTTTTGAAACAGAGCAATCAAAGGTGCT
*
29759 TTTCCAAACCCAATTTCAGCAATCTCCAAGTTGAACATCAACTAATAAAGTCACATGCTTCTGCA
261 TTTCCAAACCCAATTTCAGCAATCTACAAGTTGAACATCAACTAATAAAGTCACATGCTTCTGCA
29824 ATCAAAGGTGCTTTTTTTTTTAAATCAATTCTTGACTTGTGATCGTAGAACTGTAAGACTCATTA
326 ATCAAAGGTGCTTTTTTTTTTAAATCAATTCTTGACTTGTGATCGTAGAACTGTAAGAC-CATT-
29889 AATTTAAATTGTATCTCAGATATCAAAAGAACATTTTTTGAT
389 AATTTAAATTGTATCTCAGATATCAAAAGAACATTTTTTGAT
* *
29931 TGAGCCATCTGATGATTTGCAATTACCAAATTCTGCTGGTGAGTATGTTTTACTATCTGAATGCC
1 TGAGCCATCTGATGACTTGCAATTACCAAAGTCTGCTGGTGAGTATGTTTTACTATCTGAATGCC
* *
29996 TGCTTTAGTGGCCTATAAATGGGGACTGCATTTATCCTTTTTTAAATTTTGCCCTCTTATTGTTG
66 TGCTTTAGTGGCCTATAAATGGGGACTACATTTATCC-TTTTT---GTTTGCCCTCTTATTGTTG
* * * *
30061 TATCTGCT-CCCTTTCCAACTTTCTAATGTTATGTACCTTACGCTATAAATATCAAGTTAAACTT
127 TATCTGCTCCCCTTTCCAACTTGCTAATGTTATATACCTTACGCTACAAACATCAAGTTAAACTT
*
30125 TATCCTTAACTATGCTTACATAGGAAGCTGATCCGCAAGTAGTTTTGAAACAGAGCAATCGAAGG
192 TATCCTTAACTATGCTTACATAGGAAGCTGATCCGCAAGTAGTTTTGAAACAGAGCAATCAAAGG
*
30190 TGCTTTTTCAAACCCAATTTCAGCAATCTACAAGTTGAACATCAACTAATAAAGTCACATGCTTC
257 TGCTTTTCCAAACCCAATTTCAGCAATCTACAAGTTGAACATCAACTAATAAAGTCACATGCTTC
*
30255 TGCAATCAAAGGTGCTTTTTTTTTTTTTTTTAAATCAATTCTTGACTTGTGATCGTAGAATTGTA
322 TGCAATCAAAGGTGC------TTTTTTTTTTAAATCAATTCTTGACTTGTGATCGTAGAACTGTA
* * *
30320 AGACTTATTAAATTTAAATTGTATCTTAGATATCAAAAGAACTTTTTTT
381 AGAC-CATT-AATTTAAATTGTATCTCAGATATCAAAAGAACATTTTTT
30369 TAACCATTTG
Statistics
Matches: 409, Mismatches: 19, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
432 97 0.24
433 5 0.01
435 192 0.47
436 26 0.06
441 89 0.22
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (430 bp):
TGAGCCATCTGATGACTTGCAATTACCAAAGTCTGCTGGTGAGTATGTTTTACTATCTGAATGCC
TGCTTTAGTGGCCTATAAATGGGGACTACATTTATCCTTTTTGTTTGCCCTCTTATTGTTGTATC
TGCTCCCCTTTCCAACTTGCTAATGTTATATACCTTACGCTACAAACATCAAGTTAAACTTTATC
CTTAACTATGCTTACATAGGAAGCTGATCCGCAAGTAGTTTTGAAACAGAGCAATCAAAGGTGCT
TTTCCAAACCCAATTTCAGCAATCTACAAGTTGAACATCAACTAATAAAGTCACATGCTTCTGCA
ATCAAAGGTGCTTTTTTTTTTAAATCAATTCTTGACTTGTGATCGTAGAACTGTAAGACCATTAA
TTTAAATTGTATCTCAGATATCAAAAGAACATTTTTTGAT
Found at i:32391 original size:122 final size:120
Alignment explanation
Indices: 32176--32398 Score: 338
Period size: 122 Copynumber: 1.8 Consensus size: 120
32166 GCCATTGCAT
* * * **
32176 AGATTTGCTTGCTGTGATTTTCCGTTTCTGCTCTAATGGTTTCTTGATATTTTTCTTCTCTTCTG
1 AGATTTGCTTGCTATAATTTTCCGTTTCTGCTCTAATGATTTCTTGATACGTTTCTTCTCTTCTG
32241 CAGTTGCCTCCCCATTGGAGCTGAGCATATCCCTGTGGCGGCAAGGATTGCCTTC
66 CAGTTGCCTCCCCATTGGAGCTGAGCATATCCCTGTGGCGGCAAGGATTGCCTTC
* * * *
32296 AGATTTGCTTGGTATAATTTTCCTTTTTCTGCTCTGATGATTTCTTGCTGACGTTTCTTCTCTTC
1 AGATTTGCTTGCTATAATTTTCC-GTTTCTGCTCTAATGATTTCTTGAT-ACGTTTCTTCTCTTC
*
32361 TGCAGTTGTCTCCCCATTGGAGCTGAGCATATCCCTGT
64 TGCAGTTGCCTCCCCATTGGAGCTGAGCATATCCCTGT
32399 TGATATTGGT
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
120 20 0.22
121 21 0.23
122 50 0.55
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.43
Consensus pattern (120 bp):
AGATTTGCTTGCTATAATTTTCCGTTTCTGCTCTAATGATTTCTTGATACGTTTCTTCTCTTCTG
CAGTTGCCTCCCCATTGGAGCTGAGCATATCCCTGTGGCGGCAAGGATTGCCTTC
Found at i:32490 original size:20 final size:20
Alignment explanation
Indices: 32461--32771 Score: 209
Period size: 20 Copynumber: 15.6 Consensus size: 20
32451 TAATGAAGGC
32461 AAGTTCAATGTGAATTGGGA
1 AAGTTCAATGTGAATTGGGA
* ** *
32481 AAGTTGAATGTGAATAAGGC
1 AAGTTCAATGTGAATTGGGA
*
32501 AAGTTCAATGTGAATTGGTA
1 AAGTTCAATGTGAATTGGGA
** * *
32521 AAGTTGGATGTGAATTAAGGC
1 AAGTTCAATGTGAATT-GGGA
*
32542 AAGTTCAATGTTAATTGGGA
1 AAGTTCAATGTGAATTGGGA
** * *
32562 AAGTTGGATGTGAATTAAGGC
1 AAGTTCAATGTGAATT-GGGA
32583 AAGTTCAATGTGAATTGGGA
1 AAGTTCAATGTGAATTGGGA
* * ** *
32603 TAGTTGAATGTGAATCAAGGC
1 AAGTTCAATGTGAAT-TGGGA
32624 AAGTTCAATGTGAATTGGGA
1 AAGTTCAATGTGAATTGGGA
** *
32644 AAG-----TGTGAATAAGGC
1 AAGTTCAATGTGAATTGGGA
*
32659 AAGTTCAATGTGTATTGGGA
1 AAGTTCAATGTGAATTGGGA
* ** * ** *
32679 AAGATGGATATGAATCAAGGC
1 AAGTTCAATGTGAAT-TGGGA
*
32700 AAGTTCAATGTGAATTGGAA
1 AAGTTCAATGTGAATTGGGA
* * *
32720 AAGTTGAATGTGAATTAAGGC
1 AAGTTCAATGTGAATT-GGGA
** *
32741 AAGTTCAATGTCTATTGGGG
1 AAGTTCAATGTGAATTGGGA
32761 AAGTTCAATGT
1 AAGTTCAATGT
32772 AAATGCGCCG
Statistics
Matches: 211, Mismatches: 70, Indels: 20
0.70 0.23 0.07
Matches are distributed among these distances:
15 12 0.06
20 127 0.60
21 72 0.34
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (20 bp):
AAGTTCAATGTGAATTGGGA
Found at i:32676 original size:158 final size:160
Alignment explanation
Indices: 32446--32751 Score: 481
Period size: 158 Copynumber: 1.9 Consensus size: 160
32436 ATTGAGGGCC
* *
32446 AATGTTAATGAAGGCAAGTTCAATGTGAATTGGGAAAGTTGAATGTGAATAAGGCAAGTTCAATG
1 AATGTGAATCAAGGCAAGTTCAATGTGAATTGGGAAA--TG-ATGTGAATAAGGCAAGTTCAATG
* * * * * * *
32511 TGAATTGGTAAAGTTGGATGTGAATTAAGGCAAGTTCAATGTTAATTGGGAAAGTTGGATGTGAA
63 TGAATTGGGAAAGATGGATATGAATCAAGGCAAGTTCAATGTGAATTGGAAAAGTTGAATGTGAA
32576 TTAAGGCAAGTTCAATGTGAATTGGGATAGTTG
128 TTAAGGCAAGTTCAATGTGAATTGGGATAGTTG
*
32609 AATGTGAATCAAGGCAAGTTCAATGTGAATTGGGAAA-G-TGTGAATAAGGCAAGTTCAATGTGT
1 AATGTGAATCAAGGCAAGTTCAATGTGAATTGGGAAATGATGTGAATAAGGCAAGTTCAATGTGA
32672 ATTGGGAAAGATGGATATGAATCAAGGCAAGTTCAATGTGAATTGGAAAAGTTGAATGTGAATTA
66 ATTGGGAAAGATGGATATGAATCAAGGCAAGTTCAATGTGAATTGGAAAAGTTGAATGTGAATTA
32737 AGGCAAGTTCAATGT
131 AGGCAAGTTCAATGT
32752 CTATTGGGGA
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
158 97 0.73
160 1 0.01
163 35 0.26
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.29
Consensus pattern (160 bp):
AATGTGAATCAAGGCAAGTTCAATGTGAATTGGGAAATGATGTGAATAAGGCAAGTTCAATGTGA
ATTGGGAAAGATGGATATGAATCAAGGCAAGTTCAATGTGAATTGGAAAAGTTGAATGTGAATTA
AGGCAAGTTCAATGTGAATTGGGATAGTTG
Found at i:32771 original size:41 final size:41
Alignment explanation
Indices: 32446--32771 Score: 441
Period size: 41 Copynumber: 8.1 Consensus size: 41
32436 ATTGAGGGCC
* *
32446 AATGTTAATGAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
1 AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
*
32487 AATGTGAA-TAAGGCAAGTTCAATGTGAATTGGTAAAGTTG
1 AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
* *
32527 GATGTGAATTAAGGCAAGTTCAATGTTAATTGGGAAAGTTG
1 AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
* *
32568 GATGTGAATTAAGGCAAGTTCAATGTGAATTGGGATAGTTG
1 AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
*
32609 AATGTGAATCAAGGCAAGTTCAATGTGAATTGGGAAA---G
1 AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
* *
32647 --TGTGAA-TAAGGCAAGTTCAATGTGTATTGGGAAAGATG
1 AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
* * * *
32685 GATATGAATCAAGGCAAGTTCAATGTGAATTGGAAAAGTTG
1 AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
** * *
32726 AATGTGAATTAAGGCAAGTTCAATGTCTATTGGGGAAGTTC
1 AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
32767 AATGT
1 AATGT
32772 AAATGCGCCG
Statistics
Matches: 252, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
35 26 0.10
36 6 0.02
38 2 0.01
40 42 0.17
41 176 0.70
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.29
Consensus pattern (41 bp):
AATGTGAATTAAGGCAAGTTCAATGTGAATTGGGAAAGTTG
Found at i:34370 original size:74 final size:74
Alignment explanation
Indices: 34249--34389 Score: 246
Period size: 74 Copynumber: 1.9 Consensus size: 74
34239 GCCAAGGGGG
*
34249 CTGGGGTTTGGTTTCTTGGGTCCGAGATGATCCACTCAATTGACCAAGGGGTTTCTCGGGTCGGT
1 CTGGGGTTTGGTTTCTTGGGTCCGAGATGATCCACTCAATTGACCAAGGGGTTTCTCGGGTCAGT
34314 GATGGTCCA
66 GATGGTCCA
** *
34323 CTGGGGTTTGGTTTCTTGGGTTGGAGATGATCCACTCAGTTGACCAAGGGGTTTCTCGGGTCAGT
1 CTGGGGTTTGGTTTCTTGGGTCCGAGATGATCCACTCAATTGACCAAGGGGTTTCTCGGGTCAGT
34388 GA
66 GA
34390 AGTTTGAGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.15, C:0.18, G:0.35, T:0.32
Consensus pattern (74 bp):
CTGGGGTTTGGTTTCTTGGGTCCGAGATGATCCACTCAATTGACCAAGGGGTTTCTCGGGTCAGT
GATGGTCCA
Found at i:36882 original size:334 final size:333
Alignment explanation
Indices: 35756--37894 Score: 2798
Period size: 333 Copynumber: 6.5 Consensus size: 333
35746 GCCCCGTCAA
* * * * * * * *
35756 AATTTTGAATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATGCATCTGACTAAATCACAG
1 AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
** * * * *
35821 CCATTTTGGATTTAAGTATTT--TTTTACGAGCATCTT-ATCGTGTTTCGATTTAATTATATAAT
66 CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
* * * * * *
35883 AATTCGGAAAAAAATAAGAAAAATGATATTAGAGGTGTGAAAATCTCTTCAAT-TTTTTGGCGTT
131 AATTCAGAAAAAAATAGGAAAAACGATATTAGAGGCGTGAAAAACTCTTCAATCTTTTTGACGTT
* * * * * *
35947 AAATTATATTTTTTTGTTTCAGT-TTTCTCGCCAAAAATTGTG-GAAAAATTTTTCGGGTCAGT-
196 AAATTATA--TATTTGTATGAGTGTTT-TGGCCAAAAATTGAGCAAAAAATTTTTCGGGTCAGTG
* * * * * **
36009 TCTTGCAAAAATTTAGCCTATATCGTGTGC--ACTATCTTGGTTTTTGGCTAAAAACGCGTT-CG
258 T-TTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCG
* *
36071 AGACCCCGACTT
322 GGACCCCGACTC
* * * * * * ** *
36083 AGTTTTGAATGATTTTTGCCTCCAAAATTTATTGAAATATCTATATTCATCTAACCAAATCTCA-
1 AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAAT-T-AG
* * * * * * * * * *
36147 A-CCACATTGAATTTAAGGATTTGTTTTTACGAGTATCTTAATCATGTTTCGATTTAATTAGATA
64 AGCCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATA
* * * * * *
36211 CTAATT-TGGAAAAAATAGGAAAAACAATATTAGAGGCGTGAAAAGCTC-TCAATCTTTTTGGCG
129 TTAATTCAGAAAAAAATAGGAAAAACGATATTAGAGGCGTGAAAAACTCTTCAATCTTTTTGACG
* * * * **
36274 TTAAATTATATATTTCTATGAGTGTTCTGGCCAATAATTGAGGAAAAAAAATTTCGGGTCAGTGT
194 TTAAATTATATATTTGTATGAGTGTTTTGGCCAAAAATTGAGCAAAAAATTTTTCGGGTCAGTGT
* *
36339 TTGCAAAATTTTAGCCGAAATCGCGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCC-GG
259 TTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGG
36403 -----GACTC
324 ACCCCGACTC
* * * *
36408 --CTTGAAATGATTTTTTGCGCGAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
1 AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
*
36471 CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTCGAATTAATTATATATT
66 CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
* * * *
36536 AATTCGGAAAAAAAATGGGAAAAGCGATATTAGAGGCGTGAAAAACTCATCAATCTTTTTGACGT
131 AATTCAG-AAAAAAATAGGAAAAACGATATTAGAGGCGTGAAAAACTCTTCAATCTTTTTGACGT
** * *
36601 TAAATTATATATTTGTATGAGTGTTTTGGCCAAAAATTGAGCAAAACTTTTTTCGGGTTAGTTTT
195 TAAATTATATATTTGTATGAGTGTTTTGGCCAAAAATTGAGCAAAAAATTTTTCGGGTCAGTGTT
** * * * *
36666 TGCAAAATTTTAAACGAAATCGTATACAAACCATCACGGTTTATGGCTAAAAACGGGTTCCGGGA
260 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGA
*
36731 CCCCGGCTC
325 CCCCGACTC
* * *
36740 AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGGAATGTCTATATTCATCTAACCATACTAGAG
1 AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
* * *
36805 CCACCTTGAATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTAAATTAATTAAATATT
66 CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
* *
36870 AATTCAGAAAAAAAATAGGAAAAGCGATATTCGAGGCGTGAAAAACTCTTCAATCTTTTTGACGT
131 AATTCAG-AAAAAAATAGGAAAAACGATATTAGAGGCGTGAAAAACTCTTCAATCTTTTTGACGT
* **
36935 TAAATTATATATTTTTATGAGTGTTTTGGCCAAAAATTGAGCAAAACTTTTTTTCGGGTCAGT-T
195 TAAATTATATATTTGTATGAGTGTTTTGGCCAAAAATTGAGCAAAA-AATTTTTCGGGTCAGTGT
*
36999 TCTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCGG
259 T-TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGG
*
37064 GACCCCGGCTC
323 GACCCCGACTC
* * *
37075 AATTTTAAATGATTTTCGGCGCCAAGACTCCTTGGAATGTCTATATTCATCTAACCAAATTATAG
1 AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
*
37140 CCACCTTGGATTTATGTATTTGCTTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
66 CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
* *
37205 AATTC-GGAATAAATAGGAAAAACGATATTAGAGGCGTGAAAAACTCTTCAATCTTTTTGACGTT
131 AATTCAGAAAAAAATAGGAAAAACGATATTAGAGGCGTGAAAAACTCTTCAATCTTTTTGACGTT
**
37269 AAATTATATATTTGTATGAGTGTTCTTGGCCAAAAATTGAGCAAAATTTTTTTCGGGTCAGTGTT
196 AAATTATATATTTGTATGAGTGTT-TTGGCCAAAAATTGAGCAAAAAATTTTTCGGGTCAGTGTT
37334 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGA
260 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGA
37399 CCCCGACTC
325 CCCCGACTC
*
37408 AATTTTGAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
1 AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
37473 CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
66 CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
* * * * *
37538 AGTTCAGAAAAAAATAGGAAAAGCGATATTAGACGCGAGAAAAACTCTTCAATCTTTTTGATGTT
131 AATTCAGAAAAAAATAGGAAAAACGATATTAGAGGCGTGAAAAACTCTTCAATCTTTTTGACGTT
* *
37603 AAATTATATATTTGTATGAGTGTTTTGGCCAAAAATTGAGAAAAAAAATTTTCGGGTCAGTGTTT
196 AAATTATATATTTGTATGAGTGTTTTGGCCAAAAATTGAGCAAAAAATTTTTCGGGTCAGTGTTT
* * *
37668 GCAAAATTTTAACTGAAATCGTGTACGTTA-CATCACGGTTTTTGGCTAAAAACGCGTTCCGGGA
261 GCAAAATTTTAGCCGAAATCGTGTAC-TAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGA
** *
37732 CATCGACTT
325 CCCCGACTC
* * *
37741 AATTTTCAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACTAAATTAAAG
1 AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
* * * *
37806 CCACCTTTGATTTATGTATTTGACTTTAAGAGCATCTTAATCGTGTTTTAAATTAATTATATATT
66 CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
*
37871 AGTTCAGAAAAAAAAATAGGAAAA
131 AATTCAG--AAAAAAATAGGAAAA
Statistics
Matches: 1613, Mismatches: 166, Indels: 58
0.88 0.09 0.03
Matches are distributed among these distances:
321 1 0.00
322 2 0.00
323 105 0.07
324 1 0.00
325 39 0.02
326 123 0.08
327 89 0.06
328 48 0.03
329 70 0.04
330 54 0.03
331 1 0.00
332 4 0.00
333 525 0.33
334 328 0.20
335 223 0.14
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (333 bp):
AATTTTAAATGATTTTTGGCGCCAAGACTCCTTGAAATGTCTATATTCATCTAACCAAATTAGAG
CCACCTTGGATTTATGTATTTGATTTTACGAGCATCTTAATCGTGTTTTGAATTAATTATATATT
AATTCAGAAAAAAATAGGAAAAACGATATTAGAGGCGTGAAAAACTCTTCAATCTTTTTGACGTT
AAATTATATATTTGTATGAGTGTTTTGGCCAAAAATTGAGCAAAAAATTTTTCGGGTCAGTGTTT
GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGAC
CCCGACTC
Done.