Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000954.1 Corchorus capsularis cultivar CVL-1 contig00954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9012
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:4348 original size:24 final size:25

Alignment explanation


    Indices: 4297--4348  Score: 70
    Period size: 26  Copynumber: 2.1  Consensus size: 25

       4287 GATTATTAAC

                                      
       4297 AAGTGCTTGAAAAGTGGAGTAATAGT
          1 AAGTGCTTGAAAAGT-GAGTAATAGT

                     *            *  
       4323 AAGTGCTTGGAAAGT-AGTAATTGT
          1 AAGTGCTTGAAAAGTGAGTAATAGT

              
       4347 AA
          1 AA

       4349 AATAAAATAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  24   10  0.42
  26   14  0.58

ACGTcount: A:0.38, C:0.04, G:0.29, T:0.29


Consensus pattern (25 bp):   
AAGTGCTTGAAAAGTGAGTAATAGT

Found at i:5132 original size:6 final size:6

Alignment explanation


    Indices: 5121--5145  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       5111 TTTGCTATTA

                                         
       5121 TTTGCC TTTGCC TTTGCC TTTGCC T
          1 TTTGCC TTTGCC TTTGCC TTTGCC T

       5146 ATAGTTAACA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.32, G:0.16, T:0.52


Consensus pattern (6 bp):   
TTTGCC

Done.