Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009546.1 Corchorus capsularis cultivar CVL-1 contig09567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20011

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104--164
32
1.9
31
87
9
88
32
6
6
54
1.52
259--283
12
2.1
12
100
0
50
52
8
16
24
1.70
2799--2828
1
30.0
1
100
0
60
100
0
0
0
0.00
3589--3636
11
4.5
11
77
15
55
79
16
4
0
0.89
3585--3627
6
7.3
6
85
15
54
81
16
2
0
0.79
3585--3636
22
2.4
21
84
9
61
78
17
3
0
0.89
8044--8081
18
2.1
19
85
9
53
21
2
18
57
1.52
9795--9823
2
14.5
2
100
0
58
48
0
0
51
1.00
10998--11024
2
13.5
2
100
0
54
51
0
0
48
1.00
13239--13283
22
2.0
22
83
8
56
33
22
8
35
1.85
13613--13649
19
1.9
19
100
0
74
37
16
0
45
1.47
15279--15307
8
3.8
8
90
9
51
86
0
13
0
0.58
15671--15781
53
2.1
53
94
0
195
35
9
18
37
1.82
19198--19265
34
2.0
34
100
0
136
14
29
14
41
1.86

Tables:   1

The End!