Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009549.1 Corchorus capsularis cultivar CVL-1 contig09570, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87075

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256--484
87
2.6
87
95
0
404
41
6
17
34
1.74
8752--8832
42
1.9
42
85
5
110
38
24
6
30
1.80
24307--24348
22
1.9
22
90
0
66
80
4
9
4
0.99
24889--24932
21
2.1
21
91
0
70
29
13
18
38
1.89
34343--34418
24
3.2
24
100
0
152
46
19
26
7
1.77
38690--38715
2
13.0
2
100
0
52
50
0
0
50
1.00
42464--42499
2
18.0
2
94
0
63
50
2
0
47
1.15
64321--64349
2
14.5
2
100
0
58
48
0
0
51
1.00
64765--64790
12
2.2
12
100
0
52
30
7
15
46
1.74
75236--77207
26
71.6
27
83
10
1957
23
15
28
33
1.95
83648--86980
333
10.1
334
86
3
4348
32
15
16
35
1.90

Tables:   1

The End!