Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009557.1 Corchorus capsularis cultivar CVL-1 contig09578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89109

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--89
16
5.4
16
74
12
70
36
41
12
9
1.75
212--244
17
1.9
17
100
0
66
87
6
0
6
0.65
236--351
58
1.9
62
89
10
188
62
6
17
13
1.52
2267--2469
110
1.9
109
91
5
338
26
10
16
46
1.80
2763--3208
236
1.9
230
84
6
594
39
14
11
33
1.83
4517--4587
33
2.2
33
87
7
101
28
16
4
50
1.64
4704--4794
36
2.5
37
82
7
123
14
21
12
51
1.74
6183--6269
44
2.0
43
84
6
113
35
9
18
36
1.83
6182--6315
22
5.9
23
75
7
96
32
8
18
39
1.82
6358--6497
22
6.4
21
76
11
113
37
7
18
37
1.78
6537--6721
22
8.4
22
71
14
112
41
10
14
34
1.80
6844--7312
22
21.5
22
69
9
190
38
9
15
36
1.80
7043--7112
23
3.0
23
87
0
104
37
7
17
38
1.77
7021--7112
46
2.0
45
85
2
121
39
7
16
36
1.77
7285--7331
20
2.2
22
85
7
62
53
4
14
27
1.60
9013--9065
3
17.3
3
96
3
97
66
0
0
33
0.92
9914--9964
22
2.2
24
83
16
72
41
1
0
56
1.10
12375--12419
22
2.0
22
91
0
72
44
33
6
15
1.73
17467--17928
234
2.0
232
93
1
791
38
9
5
45
1.61
19901--19942
22
1.9
22
95
0
75
38
9
7
45
1.64
21275--21337
29
2.2
29
88
0
90
28
7
28
34
1.85
21674--21706
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32509--32872
78
4.7
78
91
1
534
38
15
11
34
1.83
49545--49589
6
7.5
6
92
0
63
13
6
62
17
1.52
53664--53720
6
10.3
6
94
5
79
85
14
0
0
0.59
53663--53720
5
10.8
5
92
3
62
84
15
0
0
0.62
67119--67311
31
6.4
31
73
13
161
35
19
18
26
1.95
67123--67285
60
2.7
60
91
1
256
34
20
19
25
1.96
67345--67512
31
5.6
30
65
16
105
28
20
19
31
1.97
67344--67508
60
2.8
60
83
0
240
27
21
18
32
1.97
69216--69659
221
2.0
221
92
2
741
37
13
14
34
1.86
74828--74854
2
13.5
2
100
0
54
48
0
0
51
1.00
75733--75775
12
3.5
12
90
6
68
34
16
23
25
1.95
78638--78679
21
2.0
21
90
0
66
9
9
11
69
1.38
79502--79547
24
1.9
24
90
0
74
6
32
6
54
1.52
80924--81029
42
2.6
41
86
10
146
19
8
28
43
1.80
84086--84121
2
18.5
2
88
5
56
50
2
0
47
1.15

Tables:   1

The End!