Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009560.1 Corchorus capsularis cultivar CVL-1 contig09581, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54911

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20235--20330
42
2.3
43
88
1
140
38
22
16
21
1.93
21322--21361
20
2.1
20
86
9
57
45
2
5
47
1.38
22889--23047
2
80.0
2
93
6
279
50
0
48
1
1.08
24142--24168
1
27.0
1
100
0
54
0
0
0
100
0.00
26481--26783
107
2.8
107
97
1
581
51
23
3
21
1.65
27476--27531
19
3.0
19
86
2
78
37
0
3
58
1.15
28135--28185
25
2.0
26
96
3
95
37
3
7
50
1.50
40845--40948
30
3.5
30
77
2
111
13
22
25
39
1.90
40906--40948
15
2.9
15
89
0
68
13
25
18
41
1.88
42161--42231
36
2.0
36
86
5
99
15
22
38
23
1.93
42168--42250
18
4.6
18
78
3
60
15
22
38
22
1.92
45341--46044
35
19.9
35
89
3
1036
34
21
13
30
1.92
46154--46201
22
2.2
22
85
7
62
12
33
6
47
1.66
47199--47277
37
2.2
37
88
2
115
31
12
12
43
1.80
47467--47516
26
1.9
26
88
8
75
10
22
2
66
1.32
47467--47527
26
2.3
26
83
8
70
9
21
1
67
1.29
47988--48017
13
2.2
14
94
5
53
0
10
0
90
0.47
53765--53790
6
4.3
6
100
0
52
0
15
0
84
0.62

Tables:   1

The End!