Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009561.1 Corchorus capsularis cultivar CVL-1 contig09582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63568

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1278--1469
60
3.1
59
65
26
153
44
7
10
36
1.68
1220--1472
127
2.0
126
98
0
488
45
7
11
36
1.68
1521--1563
2
22.0
2
90
4
70
51
2
0
46
1.13
7962--8005
18
2.4
18
85
7
54
47
6
0
45
1.29
8147--8179
1
33.0
1
93
0
57
96
0
3
0
0.20
26651--26689
12
3.6
12
80
19
50
25
28
15
30
1.96
27769--27801
3
11.3
3
93
6
59
30
0
36
33
1.58
29112--29148
2
18.5
2
100
0
74
48
0
0
51
1.00
31796--31839
22
2.0
22
100
0
88
40
13
9
36
1.76
31976--32015
19
2.2
19
90
4
64
32
20
2
45
1.64
35137--35187
3
17.0
3
100
0
102
66
0
0
33
0.92
37827--37861
3
12.0
3
93
6
63
68
0
0
31
0.90
42663--42692
2
15.0
2
100
0
60
50
0
0
50
1.00
43636--43661
12
2.2
12
100
0
52
61
0
7
30
1.24
56220--56257
11
3.5
11
85
10
51
81
15
2
0
0.80
58006--58126
58
2.1
58
98
1
235
39
21
8
30
1.83

Tables:   1

The End!