Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009562.1 Corchorus capsularis cultivar CVL-1 contig09583, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121833

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11953--12043
26
3.3
27
77
16
96
19
20
2
57
1.52
13031--13087
26
2.2
25
87
9
80
43
15
5
35
1.70
15260--15349
45
2.0
45
88
0
135
27
22
16
33
1.95
15913--16112
73
2.8
70
82
9
233
25
19
6
49
1.72
16016--16065
16
2.9
17
72
19
50
24
14
8
54
1.66
15913--16112
71
2.8
72
84
6
244
25
19
6
49
1.72
19703--20222
174
3.0
174
95
0
941
39
19
18
22
1.93
25804--25939
44
2.8
51
80
11
162
25
22
10
41
1.85
31059--31098
21
2.0
21
85
9
57
62
2
7
27
1.35
38814--38848
7
5.0
7
92
0
61
42
31
14
11
1.81
40734--40797
28
2.3
28
91
0
101
23
26
20
29
1.99
41112--41507
156
2.5
155
84
2
526
33
20
14
31
1.92
42413--42465
26
2.0
26
86
13
74
43
0
1
54
1.11
47700--47959
131
2.0
132
90
0
414
48
3
11
37
1.54
52537--52858
30
10.6
30
86
5
407
30
19
18
30
1.96
52538--52858
117
2.6
121
84
5
416
30
19
19
30
1.96
52902--52953
25
2.1
25
100
0
104
28
11
23
36
1.90
54009--54049
20
2.0
20
90
0
64
41
4
14
39
1.67
54388--54417
9
3.2
9
95
4
51
53
0
10
36
1.35
54420--54444
9
2.8
9
100
0
50
60
8
0
32
1.26
54779--54812
17
2.1
16
94
5
59
79
0
20
0
0.73
55953--56138
62
3.0
62
94
0
320
38
13
12
34
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61006--61037
6
5.5
6
96
3
57
50
0
15
34
1.45
71187--71225
12
3.6
12
80
19
50
25
25
15
33
1.95
71336--71371
10
3.6
10
92
0
63
41
22
5
30
1.76
71336--71374
20
2.0
20
100
0
78
43
20
5
30
1.73
72200--72224
10
2.5
10
100
0
50
92
0
0
8
0.40
72385--72427
12
3.5
12
90
6
68
25
20
16
37
1.93
74495--74520
12
2.2
12
100
0
52
50
34
15
0
1.45
81778--81802
2
12.5
2
100
0
50
52
0
48
0
1.00
87504--87534
16
1.9
16
93
0
53
54
19
12
12
1.70
94489--94515
1
27.0
1
100
0
54
0
0
0
100
0.00
102712--102759
24
2.0
24
91
0
78
25
43
14
16
1.86
104372--104414
2
21.5
2
95
0
77
53
46
0
0
1.00
104516--104866
115
3.0
114
90
2
540
32
19
26
21
1.97
114302--114350
21
2.3
21
82
6
55
40
16
28
14
1.87

Tables:   1

The End!