Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009564.1 Corchorus capsularis cultivar CVL-1 contig09585, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5478
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:1355 original size:33 final size:33

Alignment explanation


    Indices: 1318--1399  Score: 103
    Period size: 33  Copynumber: 2.5  Consensus size: 33

       1308 GGCGCGAGTG

                          *                   
       1318 ACCGGCCACGCGACTTGGAGAGGCCCGTG-CAAC
          1 ACCGGCCACGCGACATGGAGAGGCCCG-GCCAAC

                    *            *         * 
       1351 ACCGGCCATGCGACATGGAGATGCCCGGCCATC
          1 ACCGGCCACGCGACATGGAGAGGCCCGGCCAAC

                  *         
       1384 ACCGGCTACGCGACAT
          1 ACCGGCCACGCGACAT

       1400 AGCCATGCCC


Statistics
Matches: 42,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  32    1  0.02
  33   41  0.98

ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11


Consensus pattern (33 bp):   
ACCGGCCACGCGACATGGAGAGGCCCGGCCAAC
Done.