Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009566.1 Corchorus capsularis cultivar CVL-1 contig09587, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10170
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:9199 original size:17 final size:17

Alignment explanation


    Indices: 9177--9210  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       9167 CTCTATCATA

                     *       
       9177 CTATCAATAGCAAGTGT
          1 CTATCAATAACAAGTGT

                             
       9194 CTATCAATAACAAGTGT
          1 CTATCAATAACAAGTGT

       9211 GTGTGCTGCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29


Consensus pattern (17 bp):   
CTATCAATAACAAGTGT
Done.