genome.fa.s9567.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009567.1 Corchorus capsularis cultivar CVL-1 contig09588, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26590

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307--466	22	7.2	22	78	6	108	34	10	18	37	1.84
307--484	22	7.8	22	77	11	96	34	10	16	37	1.84
505--872	22	16.5	22	67	15	87	39	10	15	33	1.83
699--828	22	5.8	23	77	8	99	42	10	12	34	1.77
751--915	88	1.9	88	82	7	210	41	11	12	34	1.78
707--873	66	2.5	67	77	7	162	43	10	12	34	1.76
663--896	22	10.7	22	66	17	94	42	10	13	34	1.78
998--1064	19	3.5	19	81	6	82	43	11	20	23	1.85
1101--1191	22	4.1	22	71	13	62	32	15	6	45	1.72
4487--4514	3	9.3	3	100	0	56	64	0	0	35	0.94
11221--11372	70	2.1	73	89	4	229	22	27	7	42	1.81
14003--14027	13	1.9	13	100	0	50	16	32	8	44	1.76
16185--16367	96	1.9	97	82	1	233	16	23	28	31	1.96
16667--16739	28	2.6	28	91	0	110	15	12	28	43	1.82
16828--16880	19	3.0	19	71	13	51	26	9	13	50	1.71
20211--20575	55	6.6	55	91	0	536	48	8	18	24	1.75
20244--20333	29	3.2	29	63	20	73	44	11	20	24	1.83
20231--20315	26	3.2	26	63	21	66	48	8	20	23	1.76
20761--20807	24	2.0	24	91	0	76	40	4	17	38	1.69
21054--21118	26	2.5	26	85	7	87	56	3	18	21	1.54
22843--22894	14	3.7	14	78	17	54	44	7	11	36	1.70
22843--22899	28	2.1	26	84	12	71	40	7	14	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25595--25735	45	3.2	45	88	1	203	28	22	17	31	1.96
25979--26031	28	1.9	28	92	3	90	16	18	24	39	1.91
25985--26057	28	2.6	28	88	0	101	16	12	27	43	1.83
26146--26198	19	3.0	19	71	13	51	26	9	13	50	1.71

Tables:   1

The End!