Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009568.1 Corchorus capsularis cultivar CVL-1 contig09589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31902

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
353--809
55
8.3
55
92
0
689
48
7
19
24
1.75
387--476
29
3.2
29
63
20
73
44
11
20
24
1.83
374--458
26
3.2
26
63
21
66
48
8
20
23
1.76
361--873
165
3.1
160
79
10
465
48
7
19
24
1.74
917--951
15
2.4
14
95
4
61
42
2
22
31
1.68
790--992
71
2.9
70
77
10
189
47
7
20
25
1.76
974--1040
32
2.1
31
89
10
100
50
5
17
25
1.69
1186--1232
24
2.0
24
91
0
76
40
4
17
38
1.69
1479--1543
26
2.5
26
85
7
87
56
3
18
21
1.54
1999--2138
22
6.2
22
76
11
113
32
19
10
38
1.85
4859--4885
13
2.1
13
100
0
54
29
0
29
40
1.57
9100--9133
8
4.4
8
85
7
52
88
11
0
0
0.52
9100--9141
6
7.2
6
89
10
61
85
14
0
0
0.59
18420--18454
10
3.6
10
88
7
54
2
0
8
88
0.61
20114--20182
31
2.2
31
84
0
93
31
14
2
50
1.57
28334--28377
22
2.0
23
86
4
63
52
11
13
22
1.72
29347--29390
21
2.1
21
91
0
70
18
31
9
40
1.81
29616--29694
33
2.4
33
93
4
133
10
27
43
18
1.83
29617--29669
16
3.2
16
70
15
54
7
28
45
18
1.77
30502--30712
107
2.0
105
92
4
354
40
9
16
34
1.80

Tables:   1

The End!