Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009569.1 Corchorus capsularis cultivar CVL-1 contig09590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96429

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2713--2869
74
2.1
74
89
2
235
22
25
8
43
1.82
6470--6534
31
2.1
31
88
5
96
20
15
21
43
1.88
12177--12214
11
3.5
11
89
10
51
39
0
2
57
1.12
13499--13605
33
3.2
32
80
7
117
14
33
40
12
1.82
13711--13772
32
1.9
32
93
0
106
9
30
43
16
1.80
15526--15562
11
3.4
11
85
14
58
21
2
5
70
1.20
20454--20642
100
1.9
100
84
4
256
38
6
11
43
1.67
30449--30514
32
2.1
32
91
0
105
48
22
1
27
1.59
45472--45525
17
3.3
17
69
10
58
29
7
3
59
1.42
45467--45533
32
2.1
32
100
0
134
29
10
2
56
1.48
64692--64725
3
11.3
3
100
0
68
67
0
0
32
0.91
67530--67557
1
28.0
1
100
0
56
0
0
0
100
0.00
67709--67753
21
2.1
21
87
0
63
13
28
8
48
1.72
68052--68144
11
7.1
14
65
22
58
33
2
8
55
1.42
68083--68150
26
2.6
26
90
4
102
35
1
8
54
1.41
68159--68218
25
2.5
25
86
5
79
43
0
20
36
1.52
73124--73173
25
2.0
25
92
7
84
32
2
22
44
1.64
77159--77248
31
2.9
30
88
6
126
31
2
21
45
1.64
80570--80595
13
2.0
13
100
0
52
23
15
7
53
1.67
85243--85276
2
17.0
2
93
0
59
0
50
2
47
1.16
93355--93489
30
4.4
31
78
8
132
21
20
24
34
1.97

Tables:   1

The End!