Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000957.1 Corchorus capsularis cultivar CVL-1 contig00957, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.29


Found at i:431 original size:6 final size:6

Alignment explanation


    Indices: 422--449  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

        412 TAAAGTAAAG

                                            
        422 TAAATC TAAATC TAAATC TAAATC TAAA
          1 TAAATC TAAATC TAAATC TAAATC TAAA

        450 GCAGATTATA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32


Consensus pattern (6 bp):   
TAAATC

Done.