Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009570.1 Corchorus capsularis cultivar CVL-1 contig09591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22113

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
826--851
12
2.2
12
100
0
52
23
7
26
42
1.81
1581--1629
26
1.9
25
88
12
73
69
2
6
22
1.21
1582--1693
24
4.8
24
76
14
85
64
2
6
26
1.31
1735--1849
14
7.7
16
74
12
86
60
0
10
27
1.35
1725--1849
43
3.0
41
77
15
114
62
0
10
26
1.33
3185--3723
35
15.5
35
86
7
613
32
20
15
31
1.94
3185--3723
72
7.7
71
84
9
609
32
20
15
31
1.94
3185--3723
107
5.1
107
89
4
648
32
20
15
31
1.94
3707--3910
109
1.9
108
89
3
320
30
21
19
28
1.97
3689--3910
54
4.1
54
88
2
311
31
21
18
29
1.97
3910--4141
34
6.9
34
90
2
351
37
22
22
16
1.93
3910--4141
69
3.4
68
90
1
351
37
22
22
16
1.93
3910--4141
103
2.3
99
88
3
347
37
22
22
16
1.93
10360--10411
7
7.4
7
77
14
54
86
11
0
1
0.65
10360--10411
16
2.9
19
81
18
67
86
11
0
1
0.65
10360--10396
13
2.8
13
87
4
56
89
10
0
0
0.49
10361--10411
23
2.2
22
89
6
75
86
11
0
1
0.66
10858--10907
25
1.9
26
88
8
75
70
2
6
22
1.20
10882--11152
8
35.1
8
66
20
71
61
2
9
26
1.39
10870--10972
4
25.0
4
72
9
55
66
0
5
27
1.21
11003--11107
43
2.6
40
80
14
117
64
0
8
25
1.28
11007--11152
22
6.5
22
72
19
79
62
2
10
25
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16147--16189
20
2.1
21
86
4
61
39
20
18
20
1.93
16312--16343
2
17.0
2
87
12
50
50
0
0
50
1.00
18233--18323
31
2.8
31
87
11
114
32
2
19
45
1.63
22009--22073
28
2.2
31
89
8
100
29
18
7
44
1.77

Tables:   1

The End!