genome.fa.s9572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009572.1 Corchorus capsularis cultivar CVL-1 contig09593, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124120

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
802--863	30	2.1	30	96	0	115	19	40	22	17	1.91
4122--4190	29	2.3	30	80	12	79	14	24	18	42	1.88
4348--4423	30	2.6	28	85	10	91	39	14	25	21	1.91
4347--4423	29	2.6	30	84	12	97	38	14	25	20	1.91
5832--5884	20	2.6	20	84	3	61	3	7	15	73	1.20
8899--8953	19	3.1	18	82	12	60	9	7	16	67	1.40
12320--12366	16	3.2	16	67	32	50	31	8	4	55	1.49
12441--12507	22	2.9	22	74	14	55	32	22	5	38	1.78
12597--12662	22	3.0	21	82	12	80	33	12	12	42	1.79
12800--13091	22	13.0	22	72	7	140	30	20	11	36	1.89
13148--13198	22	2.3	22	83	6	50	25	17	15	41	1.89
13163--13222	22	2.7	22	86	0	84	33	18	15	33	1.92
13285--13333	22	2.2	22	82	7	55	32	24	12	30	1.92
13352--13428	22	3.5	22	71	16	70	27	14	16	41	1.87
13408--13492	22	3.9	22	76	0	62	32	21	5	40	1.77
21820--21860	21	2.0	21	90	0	64	51	12	0	36	1.40
21825--21886	21	3.0	21	75	13	56	46	17	1	33	1.58
29840--30203	58	6.3	57	83	5	408	29	33	19	17	1.95
29840--30203	116	3.1	116	87	3	495	29	33	19	17	1.95
29838--30170	174	1.9	174	87	2	490	28	34	18	18	1.95
29842--30208	174	2.1	174	83	3	479	29	33	19	17	1.95
30227--30374	28	5.6	28	81	12	204	40	25	15	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30255--30292	20	1.9	20	94	0	67	34	36	18	10	1.85
30225--30374	48	2.9	50	83	11	196	40	26	15	18	1.90
30725--30794	29	2.4	29	83	6	88	27	32	21	18	1.97
30926--31029	26	3.9	25	72	18	93	31	26	21	20	1.98
30930--31327	29	14.0	29	82	7	467	28	29	21	21	1.98
30930--31327	58	7.0	58	87	5	528	28	29	21	21	1.98
31517--31635	28	4.6	27	73	19	110	28	30	24	16	1.97
31481--31638	75	2.1	75	90	2	246	29	30	24	16	1.96
31543--31657	47	2.4	47	86	0	158	33	27	24	14	1.95
31618--31658	19	2.2	19	90	0	64	41	26	21	9	1.84
31726--31787	24	2.6	24	92	0	97	37	25	17	19	1.94
38697--38918	120	1.9	117	86	5	320	29	7	14	49	1.70
40195--40248	29	1.9	28	88	3	74	25	12	1	59	1.44
42415--42452	11	3.5	11	85	10	51	57	2	0	39	1.12
42874--42968	31	3.1	32	68	9	88	24	34	13	27	1.93
42848--42968	61	2.0	61	95	1	217	26	30	13	29	1.94
49660--49718	20	3.0	20	78	12	68	38	0	6	54	1.27
49780--49812	8	3.7	9	88	12	50	51	0	0	48	1.00
59931--60015	29	2.9	29	79	10	84	45	3	0	50	1.18
59950--60036	29	3.0	28	80	12	79	44	4	0	50	1.22
60205--60232	2	14.0	2	100	0	56	50	0	0	50	1.00
60557--60589	17	1.9	17	100	0	66	36	18	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67246--67371	65	1.9	65	91	0	207	24	26	11	36	1.90
72313--72372	29	2.0	29	90	3	93	50	5	16	28	1.66
76418--76528	55	2.0	55	100	0	222	12	27	36	24	1.91
76783--76819	2	18.5	2	94	0	65	51	0	0	48	1.00
81468--81607	55	2.5	55	98	0	271	42	16	20	21	1.89
91093--91203	50	2.2	50	96	1	206	33	14	12	39	1.84
91168--91232	34	1.9	34	96	0	121	33	12	13	40	1.82
95512--95566	17	3.2	17	86	0	65	36	16	23	23	1.94
106274--106331	22	2.7	21	73	13	55	53	0	10	36	1.35
112322--112347	1	26.0	1	100	0	52	100	0	0	0	0.00
112755--112799	21	2.1	21	84	8	56	17	35	11	35	1.86
112999--113066	32	2.1	32	94	0	118	16	32	36	14	1.89
112999--113098	32	3.1	32	85	8	105	15	31	39	15	1.87
117952--118462	168	3.0	168	89	1	763	33	7	24	34	1.84
119528--119592	32	2.0	32	100	0	130	41	9	12	36	1.75
123988--124049	18	3.4	18	76	22	67	50	0	0	50	1.00
123987--124119	13	9.5	15	71	19	94	51	1	2	45	1.23
123998--124033	6	6.5	6	87	12	51	50	0	0	50	1.00
123959--124119	41	3.9	41	75	15	118	52	1	3	42	1.24

Tables:   1

The End!