genome.fa.s9576.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009576.1 Corchorus capsularis cultivar CVL-1 contig09597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104508

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307--350	21	2.2	20	84	12	54	45	2	13	38	1.56
402--731	163	2.0	163	98	0	633	39	9	14	36	1.79
1397--1626	31	7.5	31	75	12	208	36	20	18	24	1.95
1401--1622	60	3.7	59	86	6	277	37	19	18	24	1.94
1432--1532	29	3.4	29	70	15	89	33	19	19	26	1.96
1656--1756	31	3.3	31	71	10	109	22	18	20	37	1.94
1656--1813	60	2.6	60	87	0	217	27	18	18	34	1.95
13962--13998	19	1.9	19	88	0	56	16	2	29	51	1.58
20672--20715	21	2.1	21	91	0	70	18	40	9	31	1.81
20945--20998	22	2.4	23	84	3	74	33	1	7	57	1.37
22833--22867	7	5.1	7	89	6	54	54	0	0	45	0.99
22833--22867	13	2.6	13	90	4	52	54	0	0	45	0.99
23972--24005	11	3.1	11	91	0	59	35	23	32	8	1.86
24240--24285	14	3.4	14	77	22	62	34	23	4	36	1.75
24229--24295	26	2.6	26	100	0	134	37	25	2	34	1.71
24229--24295	12	5.2	12	74	25	66	37	25	2	34	1.71
24264--24350	42	2.1	41	91	2	138	34	27	1	36	1.65
27021--27084	27	2.4	27	97	0	119	50	21	4	23	1.68
27516--27567	24	2.0	24	85	10	68	40	11	5	42	1.65
30797--30884	42	2.1	42	87	8	126	34	26	2	37	1.69
37793--37826	17	2.0	17	88	11	52	55	2	29	11	1.50
38288--38369	42	2.0	42	90	4	130	45	12	24	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41219--41250	15	2.1	15	94	0	55	0	15	9	75	1.05
42156--42182	6	4.5	6	100	0	54	51	0	14	33	1.43
48894--48921	2	14.0	2	100	0	56	50	0	0	50	1.00
51055--51120	33	2.0	33	97	2	125	45	9	18	27	1.79
58621--58658	11	3.5	11	89	10	51	39	0	2	57	1.12
58826--58854	8	3.8	8	90	9	51	10	0	0	89	0.48
58826--58854	15	1.9	15	100	0	58	10	0	0	89	0.48
61699--62687	433	2.3	432	79	8	1049	31	13	12	42	1.82
63959--63996	11	3.5	11	85	10	51	57	2	0	39	1.12
64198--64318	59	2.1	58	95	1	215	14	23	3	59	1.49
64340--64468	65	2.0	65	96	0	240	38	10	6	44	1.65
64423--64509	41	2.1	41	97	0	165	39	8	6	45	1.60
68590--68630	4	10.2	4	89	0	64	4	26	0	68	1.10
77382--77572	99	1.9	99	89	0	292	23	16	27	32	1.96
77949--77978	2	15.0	2	100	0	60	50	0	0	50	1.00
77978--78050	2	36.5	2	100	0	146	0	0	49	50	1.00
78443--78490	11	4.3	11	84	10	62	37	2	16	43	1.60
82922--83088	78	2.1	80	86	5	250	14	5	31	49	1.66
89282--89344	7	8.0	8	75	15	51	41	0	25	33	1.56
89285--89318	15	2.3	15	89	0	50	38	0	26	35	1.57
91074--91113	21	1.9	21	89	0	62	37	27	20	15	1.92
96853--97151	102	2.9	102	81	4	287	26	34	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98477--98503	2	13.5	2	100	0	54	0	48	0	51	1.00
103174--103214	20	2.0	20	100	0	82	31	24	0	43	1.54

Tables:   1

The End!