genome.fa.s9579.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009579.1 Corchorus capsularis cultivar CVL-1 contig09600, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43277

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472--558	27	3.2	27	90	6	140	18	19	34	27	1.95
1218--1398	98	1.8	98	85	2	256	45	7	24	23	1.78
1710--1838	65	2.0	65	89	3	197	58	12	13	15	1.63
10904--10988	33	2.6	33	79	1	109	24	23	20	31	1.98
16650--16714	30	2.1	31	88	2	96	27	20	4	47	1.69
16656--16721	30	2.1	31	86	5	89	31	16	4	46	1.67
18928--19000	38	1.9	38	82	0	92	42	9	13	34	1.77
18732--19092	22	16.9	21	68	16	181	39	9	15	35	1.79
18791--19092	45	7.0	44	72	13	177	40	9	15	35	1.80
18837--19090	128	2.0	127	83	2	321	40	9	14	35	1.79
19141--19196	22	2.5	22	82	2	67	33	12	16	37	1.86
19257--19305	22	2.2	22	85	7	64	53	4	14	28	1.59
19964--20035	29	2.5	30	81	6	94	40	13	23	22	1.90
21092--21199	59	1.9	57	88	9	168	34	8	14	42	1.76
23800--23959	80	2.0	80	93	0	275	29	33	24	12	1.92
31926--31952	6	4.5	6	100	0	54	18	14	0	66	1.25
31960--31991	15	2.1	15	100	0	64	50	25	0	25	1.50
33332--33385	25	2.0	28	86	13	78	42	0	12	44	1.43
37252--37296	6	7.5	6	100	0	90	17	48	17	15	1.81
39959--40024	15	4.7	15	70	21	52	48	18	0	33	1.48
40217--40270	25	2.2	25	90	3	83	53	1	1	42	1.22
41934--41967	13	2.5	14	85	4	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42622--42915	109	2.7	109	90	4	439	37	10	1	50	1.48

Tables:   1

The End!