Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009580.1 Corchorus capsularis cultivar CVL-1 contig09601, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43086

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
661--726
8
7.9
8
76
20
64
25
3
24
46
1.66
665--725
17
3.6
16
76
20
61
26
3
22
47
1.67
1086--1132
14
3.1
15
77
17
51
17
27
4
51
1.64
1269--1340
32
2.2
32
87
0
99
11
47
33
8
1.69
7713--7767
27
2.0
27
86
13
78
43
10
21
23
1.84
8114--8259
73
2.0
73
98
0
283
26
26
14
32
1.94
14285--14322
18
2.1
18
100
0
76
57
5
13
23
1.56
19271--19298
2
14.0
2
100
0
56
50
0
0
50
1.00
23123--23148
7
3.7
7
100
0
52
84
0
0
15
0.62
24079--24147
18
3.8
18
67
7
50
8
36
21
33
1.84
24097--24210
30
3.8
30
76
0
84
8
40
21
28
1.83
32938--32967
2
15.0
2
100
0
60
50
0
0
50
1.00
34526--34559
3
11.3
3
100
0
68
32
0
0
67
0.91

Tables:   1

The End!