Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009583.1 Corchorus capsularis cultivar CVL-1 contig09604, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65544

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
807--935
64
2.0
64
93
0
222
39
20
10
30
1.85
1302--1368
29
2.3
29
92
0
107
49
25
8
16
1.74
4415--4463
25
2.0
25
95
0
89
36
20
30
12
1.89
5325--5373
25
2.0
25
100
0
98
34
20
32
12
1.90
6906--6959
6
9.2
6
91
4
92
50
14
0
35
1.44
7846--7885
4
10.0
4
94
0
62
45
0
30
25
1.54
11926--11962
7
5.3
7
100
0
74
29
0
0
70
0.88
31324--31360
2
18.5
2
100
0
74
51
0
0
48
1.00
32760--32800
21
2.0
21
85
4
57
43
7
39
9
1.65
44311--44350
2
20.0
2
100
0
80
50
0
0
50
1.00
53167--53227
25
2.7
22
85
12
72
16
14
9
59
1.61
53167--53218
25
2.1
24
96
3
95
15
13
7
63
1.51
55560--55594
17
2.0
18
88
5
54
28
14
2
54
1.54
63190--63328
69
2.0
69
100
0
278
41
7
23
27
1.80
63200--63307
34
3.1
34
63
21
89
42
6
24
26
1.78
64659--64690
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!