Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009585.1 Corchorus capsularis cultivar CVL-1 contig09606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93953
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Found at i:1020 original size:21 final size:21
Alignment explanation
Indices: 994--1054 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
984 TGCGGAGACA
994 GCAAGGCTGCAAAGAAAGCAG
1 GCAAGGCTGCAAAGAAAGCAG
*
1015 GCAAGGGTGCAAAGAAAGCAG
1 GCAAGGCTGCAAAGAAAGCAG
*
1036 GCAAGGTTGCAAAGAAAGC
1 GCAAGGCTGCAAAGAAAGC
1055 CGCCATGGGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.43, C:0.16, G:0.34, T:0.07
Consensus pattern (21 bp):
GCAAGGCTGCAAAGAAAGCAG
Found at i:11101 original size:20 final size:21
Alignment explanation
Indices: 11076--11118 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
11066 AAAATAAAAT
*
11076 AAAACTACCAATTTTA-GATA
1 AAAACTACCAATTATAGGATA
*
11096 AAAACTACCCATTATAGGATA
1 AAAACTACCAATTATAGGATA
11117 AA
1 AA
11119 TATAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.51, C:0.16, G:0.07, T:0.26
Consensus pattern (21 bp):
AAAACTACCAATTATAGGATA
Found at i:48237 original size:2 final size:2
Alignment explanation
Indices: 48230--48261 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
48220 GAAATTTCTG
48230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48262 GTACGTAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:56408 original size:12 final size:12
Alignment explanation
Indices: 56391--56421 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
56381 TACTAAACCA
56391 ATCCTCCTCAAT
1 ATCCTCCTCAAT
*
56403 ATCCTCTTCAAT
1 ATCCTCCTCAAT
56415 ATCCTCC
1 ATCCTCC
56422 AAAACTCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.42, G:0.00, T:0.35
Consensus pattern (12 bp):
ATCCTCCTCAAT
Found at i:56681 original size:87 final size:86
Alignment explanation
Indices: 56535--56731 Score: 245
Period size: 87 Copynumber: 2.3 Consensus size: 86
56525 CAGGCACAAA
* * *
56535 ATCCTCTACCAAATCAGTTTCCAAAGATTTTGCATCATTACTAACCATAACTCCATTAGGAAGAT
1 ATCCTCTACCAAATCAGTTTCCAAAGATTTTGCACCATAACCAACCATAACTCCATTAGGAAGAT
56600 CACTAA-AATTTGAATTCAAACT
66 CAC-AACAA-TTGAATTCAAACT
* * *
56622 ATCCTCTACCATAAT-ATTTTCCAAAGATTTTGGACCATAACCACCCATAACTCCATTAGGAAGA
1 ATCCTCTACCA-AATCAGTTTCCAAAGATTTTGCACCATAACCAACCATAACTCCATTAGGAAGA
*
56686 TCACAATCAATTGAATTCAAATT
65 TCACAA-CAATTGAATTCAAACT
* * **
56709 ATTCTCCACCTTATCAGTTTCCA
1 ATCCTCTACCAAATCAGTTTCCA
56732 CATAATTTAC
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
86 4 0.04
87 85 0.90
88 5 0.05
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (86 bp):
ATCCTCTACCAAATCAGTTTCCAAAGATTTTGCACCATAACCAACCATAACTCCATTAGGAAGAT
CACAACAATTGAATTCAAACT
Found at i:61041 original size:15 final size:15
Alignment explanation
Indices: 61021--61062 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
61011 GAATTTAATT
61021 GTTACTTTCCCTAGA
1 GTTACTTTCCCTAGA
61036 GTTACTTTCCCTAGA
1 GTTACTTTCCCTAGA
61051 GTTACTTTCCCT
1 GTTACTTTCCCT
61063 GTAACCACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.17, C:0.29, G:0.12, T:0.43
Consensus pattern (15 bp):
GTTACTTTCCCTAGA
Found at i:70552 original size:22 final size:22
Alignment explanation
Indices: 70527--71088 Score: 204
Period size: 22 Copynumber: 25.5 Consensus size: 22
70517 ATTATCCCAT
70527 TATGAAATTTTGATAACCTTCC
1 TATGAAATTTTGATAACCTTCC
* *** *
70549 TATGAAATTTTAATAATGATAC
1 TATGAAATTTTGATAACCTTCC
* * **
70571 TATGGAATTTTGAGAACCTTTT
1 TATGAAATTTTGATAACCTTCC
* ** *
70593 TAT-AATTTTTTTTAACCTTCT
1 TATGAAATTTTGATAACCTTCC
* * * *
70614 TATGAAATTTGGTTAATCTCCC
1 TATGAAATTTTGATAACCTTCC
* * *
70636 TAAGGAATTTTGA-AGACC-TCAA
1 TATGAAATTTTGATA-ACCTTC-C
* * *
70658 TACGAAATTTTGATAACTTTCA
1 TATGAAATTTTGATAACCTTCC
* **
70680 TAACGAAATTTTGATAACCAACAC
1 T-ATGAAATTTTGATAACCTTC-C
* * *
70704 TATCAGATGTTGATAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* * * *
70725 ATATGATATATTGATAACC-ACGT
1 -TATGAAATTTTGATAACCTTC-C
* * *
70748 TATGAAAATTTAAAAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* *
70769 ATATG-AATTGTT-AGTAATC-ACAC
1 -TATGAAATT-TTGA-TAACCTTC-C
* * *
70792 TCTGAAATTTTGATAATC-ACAC
1 TATGAAATTTTGATAACCTTC-C
* *
70814 TATGAAATTGTGATAACC-TCGT
1 TATGAAATTTTGATAACCTTC-C
*
70836 TATGAAATTTTGATAAATCTTCC
1 TATGAAATTTTGAT-AACCTTCC
* *
70859 TATAAAATTTTGATAAACCTCCC
1 TATGAAATTTTGAT-AACCTTCC
* ** *
70882 TATAAAATTTTGATAATTTTCT
1 TATGAAATTTTGATAACCTTCC
* *
70904 TATGAAATCTTGATAACCTCCC
1 TATGAAATTTTGATAACCTTCC
* *
70926 TATG-ATTTTTCGATAACC-TCAT
1 TATGAAATTTT-GATAACCTTC-C
* * * *
70948 TATGATATTTTGTTAATCTCCC
1 TATGAAATTTTGATAACCTTCC
* * *
70970 TATGAAATTTTGATCTA-CATAC
1 TATGAAATTTTGAT-AACCTTCC
* *
70992 TATGAAATTTTGATAACCCTCT
1 TATGAAATTTTGATAACCTTCC
* * **
71014 TTTGAAATTTTGA-AAACTAAAC
1 TATGAAATTTTGATAACCT-TCC
* *
71036 TATGAAATTTTAATAACCTTCA
1 TATGAAATTTTGATAACCTTCC
*
71058 TATGAAATTTTGATATCC-TCC
1 TATGAAATTTTGATAACCTTCC
*
71079 T-TGAATTTTT
1 TATGAAATTTT
71089 TATTACTCCA
Statistics
Matches: 396, Mismatches: 119, Indels: 52
0.70 0.21 0.09
Matches are distributed among these distances:
20 8 0.02
21 34 0.09
22 265 0.67
23 86 0.22
24 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCC
Found at i:70868 original size:23 final size:23
Alignment explanation
Indices: 70840--70919 Score: 99
Period size: 23 Copynumber: 3.5 Consensus size: 23
70830 CCTCGTTATG
70840 AAATTTTGATAAATCTTCCTATA
1 AAATTTTGATAAATCTTCCTATA
* *
70863 AAATTTTGATAAACCTCCCTATA
1 AAATTTTGATAAATCTTCCTATA
* * *
70886 AAATTTTGAT-AATTTTCTTATG
1 AAATTTTGATAAATCTTCCTATA
*
70908 AAATCTTGATAA
1 AAATTTTGATAA
70920 CCTCCCTATG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 16 0.33
23 32 0.67
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (23 bp):
AAATTTTGATAAATCTTCCTATA
Found at i:70918 original size:45 final size:44
Alignment explanation
Indices: 70796--70928 Score: 137
Period size: 45 Copynumber: 3.0 Consensus size: 44
70786 TCACACTCTG
* ** *
70796 AAATTTTGAT-AATC-ACACTATGAAATTGTGATAACCTCGTTATG
1 AAATTTTGATAAATCTTC-CTATGAAATT-TGATAACCTCCCTATA
*
70840 AAATTTTGATAAATCTTCCTATAAAATTTTGATAAACCTCCCTATA
1 AAATTTTGATAAATCTTCCTATGAAA-TTTGAT-AACCTCCCTATA
* *
70886 AAATTTTGAT-AATTTTCTTATGAAATCTTGATAACCTCCCTAT
1 AAATTTTGATAAATCTTCCTATGAAAT-TTGATAACCTCCCTAT
70929 GATTTTTCGA
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
44 22 0.29
45 32 0.42
46 22 0.29
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (44 bp):
AAATTTTGATAAATCTTCCTATGAAATTTGATAACCTCCCTATA
Found at i:71264 original size:22 final size:22
Alignment explanation
Indices: 71173--71387 Score: 86
Period size: 22 Copynumber: 9.7 Consensus size: 22
71163 GAAATACCAC
*
71173 TATGAAATTTTTG-TAATCATAT
1 TATGAAA-TTTTGATAATCACAT
* * * * *
71195 TTTGAAAATTTGATAACCTCTT
1 TATGAAATTTTGATAATCACAT
* * * * *
71217 TATAAAATTTTGTTGA-CCCTT
1 TATGAAATTTTGATAATCACAT
*
71238 CTATGAAATTCTGATAATCACAT
1 -TATGAAATTTTGATAATCACAT
* *
71261 TATGTAATTTTGATAACCTCGC-T
1 TATGAAATTTTGATAA--TCACAT
** *
71284 T-TGAAATTTTGATAAGAACAC
1 TATGAAATTTTGATAATCACAT
***
71305 TATGAAATTTTGATAAT-TTTT
1 TATGAAATTTTGATAATCACAT
71326 CTAT-AAATTTTGATAATC-CGATCT
1 -TATGAAATTTTGATAATCAC-A--T
* *
71350 CTATGAAATTTCGATAATCACTT
1 -TATGAAATTTTGATAATCACAT
*
71373 TATGAGA-TTTGATAA
1 TATGAAATTTTGATAA
71388 CCTTCTATCA
Statistics
Matches: 142, Mismatches: 37, Indels: 29
0.68 0.18 0.14
Matches are distributed among these distances:
20 1 0.01
21 29 0.20
22 84 0.59
23 6 0.04
24 8 0.06
25 13 0.09
26 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (22 bp):
TATGAAATTTTGATAATCACAT
Found at i:71458 original size:22 final size:21
Alignment explanation
Indices: 71197--71481 Score: 123
Period size: 22 Copynumber: 12.8 Consensus size: 21
71187 AATCATATTT
* *
71197 TGAAAATTTGATAACCTCTTTA
1 TGAAATTTTGATAACCT-TCTA
* * *
71219 TAAAATTTTGTTGACCCTTCTA
1 TGAAATTTTGAT-AACCTTCTA
* *
71241 TGAAATTCTGATAATCACAT-TA
1 TGAAATTTTGATAA-C-CTTCTA
* * *
71263 TGTAATTTTGATAACCTCGCTT
1 TGAAATTTTGATAACCT-TCTA
* *
71285 TGAAATTTTGATAAGAAC-ACTA
1 TGAAATTTTGAT-A-ACCTTCTA
**
71307 TGAAATTTTGATAATTTTTCTA
1 TGAAATTTTGATAA-CCTTCTA
71329 T-AAATTTTGATAATCCGATCTCTA
1 TGAAATTTTGATAA-CC--T-TCTA
*
71353 TGAAATTTCGATAATCACTT-TA
1 TGAAATTTTGATAA-C-CTTCTA
*
71375 TGAGA-TTTGATAACCTTCTA
1 TGAAATTTTGATAACCTTCTA
* * * *
71395 TCAAATTTTGGTACTCCTTATGAAA
1 TGAAATTTTGATA-ACCTTCT---A
71420 TTGAGAATTTT-ATAACCTTCATA
1 -TGA-AATTTTGATAACCTTC-TA
**
71443 TGAAATTTTGATAACCACACTA
1 TGAAATTTTGATAACC-TTCTA
*
71465 TAAAATTTTGATAACCT
1 TGAAATTTTGATAACCT
71482 CCCCATGAAA
Statistics
Matches: 198, Mismatches: 40, Indels: 51
0.69 0.14 0.18
Matches are distributed among these distances:
19 3 0.02
20 8 0.04
21 35 0.18
22 103 0.52
23 11 0.06
24 8 0.04
25 18 0.09
26 6 0.03
27 6 0.03
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (21 bp):
TGAAATTTTGATAACCTTCTA
Found at i:71556 original size:22 final size:22
Alignment explanation
Indices: 71498--71556 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
71488 GAAATATTTA
*
71498 ATGAAATTTTGTTAACCACACT
1 ATGAAATTTTGATAACCACACT
* *
71520 ATGAAATTCTT-ATAACCTCGCT
1 ATGAAATT-TTGATAACCACACT
*
71542 ATGACATTTTGATAA
1 ATGAAATTTTGATAA
71557 TATCTTTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (22 bp):
ATGAAATTTTGATAACCACACT
Found at i:71570 original size:56 final size:56
Alignment explanation
Indices: 71442--71590 Score: 160
Period size: 56 Copynumber: 2.7 Consensus size: 56
71432 TAACCTTCAT
71442 ATGAAATTTTGATAACCACACTATAAAATTTTGATAACCTCCCCATGAAATATTTA
1 ATGAAATTTTGATAACCACACTATAAAATTTTGATAACCTCCCCATGAAATATTTA
* * * * * *
71498 ATGAAATTTTGTTAACCACACTATGAAATTCTT-ATAACCTCGCTATGACAT-TTTG
1 ATGAAATTTTGATAACCACACTATAAAATT-TTGATAACCTCCCCATGAAATATTTA
*** *
71553 AT-AATATCTTTGATAACCTTTCTATAAAATTGTGATAA
1 ATGAA-AT-TTTGATAACCACACTATAAAATTTTGATAA
71591 TTAACCACCC
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
54 2 0.03
55 8 0.10
56 65 0.84
57 2 0.03
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (56 bp):
ATGAAATTTTGATAACCACACTATAAAATTTTGATAACCTCCCCATGAAATATTTA
Found at i:71624 original size:22 final size:22
Alignment explanation
Indices: 71599--71686 Score: 88
Period size: 22 Copynumber: 3.9 Consensus size: 22
71589 AATTAACCAC
*
71599 CCTATGAAATTTCAATAACCGA
1 CCTATGAAATTTTAATAACCGA
* *
71621 CCTAAGAGATTTTAATAACCTGA
1 CCTATGAAATTTTAATAACC-GA
**
71644 TCCTATGAAATTTTGGTAACC-A
1 -CCTATGAAATTTTAATAACCGA
*
71666 CACTATGAAATTTTGATAACC
1 C-CTATGAAATTTTAATAACC
71687 TCTTGATGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
21 1 0.02
22 36 0.65
23 2 0.04
24 16 0.29
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (22 bp):
CCTATGAAATTTTAATAACCGA
Found at i:71664 original size:46 final size:46
Alignment explanation
Indices: 71599--71687 Score: 108
Period size: 46 Copynumber: 1.9 Consensus size: 46
71589 AATTAACCAC
*
71599 CCTATGAAATTTCAATAACCGAC-CTAAGAGATTTTAATAACCTGAT
1 CCTATGAAATTTCAATAACC-ACACTAAGAAATTTTAATAACCTGAT
*** * *
71645 CCTATGAAATTTTGGTAACCACACTATGAAATTTTGATAACCT
1 CCTATGAAATTTCAATAACCACACTAAGAAATTTTAATAACCT
71688 CTTGATGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
45 2 0.06
46 34 0.94
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (46 bp):
CCTATGAAATTTCAATAACCACACTAAGAAATTTTAATAACCTGAT
Found at i:71695 original size:22 final size:21
Alignment explanation
Indices: 71647--71733 Score: 84
Period size: 22 Copynumber: 3.9 Consensus size: 21
71637 AACCTGATCC
* * *
71647 TATGAAATTTTGGTAACCACAC
1 TATGAAATTTTGATAACCTC-T
71669 TATGAAATTTTGATAACCTCT
1 TATGAAATTTTGATAACCTCT
*
71690 TGATGAAATTATAATGATAATCATCT
1 T-ATGAAATT-T--TGATAA-CCTCT
71716 TATGAAATTTTGATAACC
1 TATGAAATTTTGATAACC
71734 ACATAGAGAC
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
21 2 0.04
22 32 0.58
23 1 0.02
24 1 0.02
25 14 0.25
26 5 0.09
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (21 bp):
TATGAAATTTTGATAACCTCT
Found at i:71931 original size:19 final size:21
Alignment explanation
Indices: 71900--71942 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 21
71890 TATTGACATT
71900 TAAAAATTGAAATT-A-AAAA
1 TAAAAATTGAAATTCATAAAA
71919 TAAAATATT-AAATTCATAAAA
1 TAAAA-ATTGAAATTCATAAAA
71940 TAA
1 TAA
71943 TAGTAAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 10 0.48
20 4 0.19
21 7 0.33
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
TAAAAATTGAAATTCATAAAA
Found at i:83780 original size:18 final size:18
Alignment explanation
Indices: 83742--83780 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
83732 AAAGAAACAC
*
83742 TTTGTTTTTGTTTTTTGT
1 TTTGTTTTTGTTTTTTAT
83760 TTTGTTTTT-TTTTTTCAT
1 TTTGTTTTTGTTTTTT-AT
83778 TTT
1 TTT
83781 CTTCCCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.03, C:0.03, G:0.10, T:0.85
Consensus pattern (18 bp):
TTTGTTTTTGTTTTTTAT
Found at i:87447 original size:46 final size:44
Alignment explanation
Indices: 87383--87469 Score: 156
Period size: 46 Copynumber: 1.9 Consensus size: 44
87373 CTGGAACAAA
87383 TTTTTTTCCCCTTTTTATGTCAATCAAAGAGGCAATCAAAGTGT
1 TTTTTTTCCCCTTTTTATGTCAATCAAAGAGGCAATCAAAGTGT
87427 TTTTTTTCCCTCTTTTTTATGTCAATCAAAGAGGCAATCAAAG
1 TTTTTTTCCC-C-TTTTTATGTCAATCAAAGAGGCAATCAAAG
87470 ATTTAATTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
44 10 0.24
45 1 0.02
46 30 0.73
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (44 bp):
TTTTTTTCCCCTTTTTATGTCAATCAAAGAGGCAATCAAAGTGT
Found at i:93656 original size:62 final size:63
Alignment explanation
Indices: 93590--93715 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
93580 GATAGATTCC
93590 AAAATACAATTGAATCTATTAATTAA-TTTTTTTGGGTACATGAATCTATTAATTAATTAATA
1 AAAATACAATTGAATCTATTAATTAATTTTTTTTGGGTACATGAATCTATTAATTAATTAATA
*
93652 AAAATACAATTGAATCTATTAATTAATTTTTTTTGGGTATATGAATCTATTAATTAATTAATA
1 AAAATACAATTGAATCTATTAATTAATTTTTTTTGGGTACATGAATCTATTAATTAATTAATA
93715 A
1 A
93716 TTTATATGTG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 26 0.42
63 36 0.58
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (63 bp):
AAAATACAATTGAATCTATTAATTAATTTTTTTTGGGTACATGAATCTATTAATTAATTAATA
Found at i:93671 original size:32 final size:32
Alignment explanation
Indices: 93590--93679 Score: 103
Period size: 30 Copynumber: 2.9 Consensus size: 32
93580 GATAGATTCC
** *
93590 AAAATACAATTGAATCTATTAATTAATTTTTT
1 AAAATACAATTGAATCTATTAATTAATTAATA
****
93622 TGGGTAC-A-TGAATCTATTAATTAATTAATA
1 AAAATACAATTGAATCTATTAATTAATTAATA
93652 AAAATACAATTGAATCTATTAATTAATT
1 AAAATACAATTGAATCTATTAATTAATT
93680 TTTTTTGGGT
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
30 22 0.49
31 2 0.04
32 21 0.47
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (32 bp):
AAAATACAATTGAATCTATTAATTAATTAATA
Done.