Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009586.1 Corchorus capsularis cultivar CVL-1 contig09607, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43414

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1147--1218
18
3.9
18
70
22
60
41
0
4
54
1.20
1174--1236
18
3.3
19
75
22
53
38
1
4
55
1.31
1203--1258
30
2.0
27
82
10
67
39
8
1
50
1.44
2694--2910
47
4.6
47
79
8
192
18
18
26
35
1.95
3245--3316
23
3.0
25
71
8
76
22
23
23
30
1.99
3456--3621
31
5.5
30
70
16
137
33
18
21
27
1.96
3457--3617
60
2.7
60
94
0
277
33
18
21
26
1.96
3651--3751
31
3.3
30
72
15
100
25
20
15
37
1.93
3681--3780
29
3.4
28
74
15
94
30
20
15
35
1.93
3645--3788
60
2.4
60
90
4
236
29
19
15
36
1.92
3645--3811
60
2.8
60
87
7
234
28
19
16
35
1.93
6389--6422
16
2.2
15
89
5
50
64
0
5
29
1.17
7545--7580
2
18.5
2
94
5
65
50
0
0
50
1.00
11495--11547
25
2.1
25
85
0
70
32
37
7
22
1.82
12280--12338
27
2.2
27
93
0
100
32
30
11
25
1.92
14523--14591
29
2.4
29
87
0
93
20
13
28
37
1.90
29383--29455
33
2.2
33
95
2
130
20
27
2
49
1.63
29488--29653
33
4.8
35
84
9
225
33
18
19
28
1.95
29485--29653
69
2.4
69
94
0
284
33
17
19
28
1.95
31076--31149
38
1.9
38
86
5
105
31
12
25
31
1.92
31384--31541
83
1.9
82
89
3
246
28
15
17
38
1.90

Tables:   1

The End!